Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0265 and ccmF-1 are separated by 398 nucleotides ccmF-1 and dsbE are separated by 11 nucleotides dsbE and ccmH overlap by 4 nucleotides
SO0265: SO0265 - conserved hypothetical protein (NCBI ptt file), at 264,025 to 265,272
SO0265
SO0266: ccmF-1 - cytochrome c-type biogenesis protein CcmF (NCBI ptt file), at 265,671 to 267,650
ccmF-1
SO0267: dsbE - thiol:disulfide interchange protein DsbE (NCBI ptt file), at 267,662 to 268,216
dsbE
SO0268: ccmH - cytochrome c-type biogenesis protein CcmH (NCBI ptt file), at 268,213 to 268,692
ccmH
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -2
-1
0
1
2 at 264.674 kb on - strand, within SO0265 at 264.676 kb on + strand, within SO0265 at 264.676 kb on + strand, within SO0265 at 264.684 kb on - strand, within SO0265 at 264.774 kb on - strand, within SO0265 at 264.864 kb on - strand, within SO0265 at 264.977 kb on - strand, within SO0265 at 264.994 kb on - strand, within SO0265 at 265.038 kb on - strand, within SO0265 at 265.095 kb on - strand, within SO0265 at 265.211 kb on + strand at 265.221 kb on + strand at 265.221 kb on + strand at 265.221 kb on + strand at 265.221 kb on + strand at 265.221 kb on + strand at 265.229 kb on - strand at 265.229 kb on - strand at 265.229 kb on - strand at 265.229 kb on - strand at 265.358 kb on - strand at 265.721 kb on - strand at 265.772 kb on - strand at 265.799 kb on - strand at 265.942 kb on + strand, within ccmF-1 at 265.956 kb on + strand, within ccmF-1 at 266.081 kb on - strand, within ccmF-1 at 266.098 kb on + strand, within ccmF-1 at 266.098 kb on + strand, within ccmF-1 at 266.098 kb on + strand, within ccmF-1 at 266.098 kb on + strand, within ccmF-1 at 266.106 kb on - strand, within ccmF-1 at 266.106 kb on - strand, within ccmF-1 at 266.195 kb on - strand, within ccmF-1 at 266.255 kb on - strand, within ccmF-1 at 266.295 kb on + strand, within ccmF-1 at 266.303 kb on - strand, within ccmF-1 at 266.447 kb on - strand, within ccmF-1 at 266.559 kb on + strand, within ccmF-1 at 266.561 kb on + strand, within ccmF-1 at 266.569 kb on - strand, within ccmF-1 at 266.589 kb on + strand, within ccmF-1 at 266.683 kb on + strand, within ccmF-1 at 266.691 kb on - strand, within ccmF-1 at 266.691 kb on - strand, within ccmF-1 at 266.691 kb on - strand, within ccmF-1 at 266.766 kb on - strand, within ccmF-1 at 266.837 kb on + strand, within ccmF-1 at 266.900 kb on + strand, within ccmF-1 at 267.064 kb on + strand, within ccmF-1 at 267.100 kb on - strand, within ccmF-1 at 267.128 kb on - strand, within ccmF-1 at 267.258 kb on + strand, within ccmF-1 at 267.266 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.362 kb on + strand, within ccmF-1 at 267.573 kb on + strand at 267.959 kb on - strand, within dsbE at 267.959 kb on - strand, within dsbE at 268.050 kb on + strand, within dsbE at 268.058 kb on - strand, within dsbE at 268.122 kb on + strand, within dsbE at 268.158 kb on + strand, within dsbE at 268.159 kb on + strand, within dsbE at 268.206 kb on + strand at 268.246 kb on + strand at 268.278 kb on + strand, within ccmH at 268.285 kb on + strand, within ccmH at 268.286 kb on - strand, within ccmH at 268.400 kb on - strand, within ccmH at 268.426 kb on + strand, within ccmH at 268.428 kb on + strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.454 kb on - strand, within ccmH at 268.454 kb on - strand, within ccmH at 268.560 kb on - strand, within ccmH at 268.582 kb on - strand, within ccmH at 268.608 kb on + strand, within ccmH
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 264,674 - SO0265 0.52 -1.4 264,676 + SO0265 0.52 +0.5 264,676 + SO0265 0.52 +0.1 264,684 - SO0265 0.53 -1.4 264,774 - SO0265 0.60 -1.3 264,864 - SO0265 0.67 -0.7 264,977 - SO0265 0.76 -2.5 264,994 - SO0265 0.78 +2.1 265,038 - SO0265 0.81 +0.5 265,095 - SO0265 0.86 +2.1 265,211 + -0.7 265,221 + -1.3 265,221 + -1.1 265,221 + -0.3 265,221 + -2.2 265,221 + +1.1 265,229 - -2.3 265,229 - -2.2 265,229 - -2.3 265,229 - -1.1 265,358 - +0.5 265,721 - +1.1 265,772 - +0.5 265,799 - -1.1 265,942 + ccmF-1 SO0266 0.14 +0.9 265,956 + ccmF-1 SO0266 0.14 -1.9 266,081 - ccmF-1 SO0266 0.21 -1.1 266,098 + ccmF-1 SO0266 0.22 -1.9 266,098 + ccmF-1 SO0266 0.22 -0.5 266,098 + ccmF-1 SO0266 0.22 +1.1 266,098 + ccmF-1 SO0266 0.22 -0.5 266,106 - ccmF-1 SO0266 0.22 +0.1 266,106 - ccmF-1 SO0266 0.22 -1.3 266,195 - ccmF-1 SO0266 0.26 -2.0 266,255 - ccmF-1 SO0266 0.29 -1.9 266,295 + ccmF-1 SO0266 0.32 -1.4 266,303 - ccmF-1 SO0266 0.32 -2.5 266,447 - ccmF-1 SO0266 0.39 -0.8 266,559 + ccmF-1 SO0266 0.45 -1.9 266,561 + ccmF-1 SO0266 0.45 -0.9 266,569 - ccmF-1 SO0266 0.45 -1.4 266,589 + ccmF-1 SO0266 0.46 +2.1 266,683 + ccmF-1 SO0266 0.51 -1.6 266,691 - ccmF-1 SO0266 0.52 -2.3 266,691 - ccmF-1 SO0266 0.52 -1.9 266,691 - ccmF-1 SO0266 0.52 +0.5 266,766 - ccmF-1 SO0266 0.55 -0.5 266,837 + ccmF-1 SO0266 0.59 -0.3 266,900 + ccmF-1 SO0266 0.62 -0.3 267,064 + ccmF-1 SO0266 0.70 -1.1 267,100 - ccmF-1 SO0266 0.72 -0.5 267,128 - ccmF-1 SO0266 0.74 +0.5 267,258 + ccmF-1 SO0266 0.80 -1.1 267,266 - ccmF-1 SO0266 0.81 -1.1 267,310 - ccmF-1 SO0266 0.83 +1.1 267,310 - ccmF-1 SO0266 0.83 -0.7 267,310 - ccmF-1 SO0266 0.83 -2.3 267,362 + ccmF-1 SO0266 0.85 -0.7 267,573 + +1.0 267,959 - dsbE SO0267 0.54 -1.1 267,959 - dsbE SO0267 0.54 +0.1 268,050 + dsbE SO0267 0.70 -2.7 268,058 - dsbE SO0267 0.71 +0.5 268,122 + dsbE SO0267 0.83 -1.1 268,158 + dsbE SO0267 0.89 -1.9 268,159 + dsbE SO0267 0.90 +0.5 268,206 + -2.1 268,246 + +0.5 268,278 + ccmH SO0268 0.14 +0.5 268,285 + ccmH SO0268 0.15 -1.4 268,286 - ccmH SO0268 0.15 -1.7 268,400 - ccmH SO0268 0.39 -0.3 268,426 + ccmH SO0268 0.44 -1.8 268,428 + ccmH SO0268 0.45 -0.7 268,436 - ccmH SO0268 0.46 -1.1 268,436 - ccmH SO0268 0.46 -0.3 268,436 - ccmH SO0268 0.46 -0.9 268,446 + ccmH SO0268 0.49 -1.5 268,446 + ccmH SO0268 0.49 -1.3 268,446 + ccmH SO0268 0.49 -1.6 268,446 + ccmH SO0268 0.49 -0.7 268,446 + ccmH SO0268 0.49 -2.7 268,446 + ccmH SO0268 0.49 -0.3 268,446 + ccmH SO0268 0.49 -0.3 268,454 - ccmH SO0268 0.50 -0.5 268,454 - ccmH SO0268 0.50 -0.7 268,560 - ccmH SO0268 0.72 -0.9 268,582 - ccmH SO0268 0.77 -1.9 268,608 + ccmH SO0268 0.82 -1.4
Or see this region's nucleotide sequence