Experiment: KB with Cotarnine Chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4582 and Psyr_4583 are separated by 11 nucleotides Psyr_4583 and Psyr_4584 are separated by 114 nucleotides Psyr_4584 and Psyr_4585 are separated by 7 nucleotides
Psyr_4582: Psyr_4582 - hypothetical protein, at 5,444,061 to 5,444,558
_4582
Psyr_4583: Psyr_4583 - Glycoside hydrolase, family 19, at 5,444,570 to 5,445,115
_4583
Psyr_4584: Psyr_4584 - Protein of unknown function DUF144, at 5,445,230 to 5,445,796
_4584
Psyr_4585: Psyr_4585 - hypothetical protein, at 5,445,804 to 5,447,126
_4585
Position (kb) 5445
5446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5444.513 kb on + strand at 5444.513 kb on + strand at 5444.513 kb on + strand at 5444.514 kb on - strand at 5444.558 kb on + strand at 5444.599 kb on - strand at 5444.799 kb on + strand, within Psyr_4583 at 5444.800 kb on - strand, within Psyr_4583 at 5444.800 kb on - strand, within Psyr_4583 at 5444.800 kb on - strand, within Psyr_4583 at 5444.907 kb on + strand, within Psyr_4583 at 5444.907 kb on + strand, within Psyr_4583 at 5444.908 kb on - strand, within Psyr_4583 at 5444.919 kb on + strand, within Psyr_4583 at 5444.919 kb on + strand, within Psyr_4583 at 5444.919 kb on + strand, within Psyr_4583 at 5444.919 kb on + strand, within Psyr_4583 at 5444.920 kb on - strand, within Psyr_4583 at 5444.920 kb on - strand, within Psyr_4583 at 5444.933 kb on + strand, within Psyr_4583 at 5444.934 kb on - strand, within Psyr_4583 at 5444.946 kb on + strand, within Psyr_4583 at 5444.946 kb on + strand, within Psyr_4583 at 5444.947 kb on - strand, within Psyr_4583 at 5444.947 kb on - strand, within Psyr_4583 at 5444.947 kb on - strand, within Psyr_4583 at 5444.972 kb on + strand, within Psyr_4583 at 5444.973 kb on - strand, within Psyr_4583 at 5444.973 kb on - strand, within Psyr_4583 at 5445.092 kb on + strand at 5445.092 kb on + strand at 5445.101 kb on + strand at 5445.129 kb on - strand at 5445.141 kb on + strand at 5445.155 kb on - strand at 5445.168 kb on + strand at 5445.187 kb on - strand at 5445.187 kb on - strand at 5445.233 kb on + strand at 5445.233 kb on + strand at 5445.233 kb on + strand at 5445.233 kb on + strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.234 kb on - strand at 5445.322 kb on - strand, within Psyr_4584 at 5445.322 kb on - strand, within Psyr_4584 at 5445.385 kb on - strand, within Psyr_4584 at 5445.400 kb on + strand, within Psyr_4584 at 5445.400 kb on + strand, within Psyr_4584 at 5445.400 kb on + strand, within Psyr_4584 at 5445.400 kb on + strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.401 kb on - strand, within Psyr_4584 at 5445.419 kb on + strand, within Psyr_4584 at 5445.420 kb on - strand, within Psyr_4584 at 5445.455 kb on + strand, within Psyr_4584 at 5445.456 kb on - strand, within Psyr_4584 at 5445.510 kb on + strand, within Psyr_4584 at 5445.510 kb on + strand, within Psyr_4584 at 5445.511 kb on - strand, within Psyr_4584 at 5445.511 kb on - strand, within Psyr_4584 at 5445.511 kb on - strand, within Psyr_4584 at 5445.511 kb on - strand, within Psyr_4584 at 5445.513 kb on + strand, within Psyr_4584 at 5445.513 kb on + strand, within Psyr_4584 at 5445.513 kb on + strand, within Psyr_4584 at 5445.513 kb on + strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.514 kb on - strand, within Psyr_4584 at 5445.600 kb on + strand, within Psyr_4584 at 5445.709 kb on + strand, within Psyr_4584 at 5445.709 kb on + strand, within Psyr_4584 at 5445.710 kb on - strand, within Psyr_4584 at 5445.779 kb on + strand at 5445.779 kb on + strand at 5445.779 kb on + strand at 5445.779 kb on + strand at 5445.780 kb on - strand at 5445.780 kb on - strand at 5445.780 kb on - strand at 5445.786 kb on + strand at 5445.786 kb on + strand at 5445.786 kb on + strand at 5445.786 kb on + strand at 5445.786 kb on + strand at 5445.786 kb on + strand at 5445.786 kb on + strand at 5445.786 kb on + strand at 5445.786 kb on + strand at 5445.787 kb on - strand at 5445.787 kb on - strand at 5445.787 kb on - strand at 5445.787 kb on - strand at 5445.790 kb on + strand at 5445.791 kb on - strand at 5445.791 kb on - strand at 5445.791 kb on - strand at 5445.791 kb on - strand at 5445.796 kb on + strand at 5445.796 kb on + strand at 5445.796 kb on + strand at 5445.797 kb on - strand at 5445.797 kb on - strand at 5445.797 kb on - strand at 5445.900 kb on + strand at 5445.917 kb on + strand at 5445.928 kb on + strand at 5445.928 kb on + strand at 5445.929 kb on - strand at 5445.933 kb on + strand at 5445.933 kb on + strand at 5445.933 kb on + strand at 5445.933 kb on + strand at 5445.934 kb on - strand at 5445.934 kb on - strand at 5445.934 kb on - strand at 5445.934 kb on - strand at 5445.934 kb on - strand at 5445.951 kb on + strand, within Psyr_4585 at 5445.992 kb on + strand, within Psyr_4585 at 5445.992 kb on + strand, within Psyr_4585 at 5445.992 kb on + strand, within Psyr_4585 at 5445.992 kb on + strand, within Psyr_4585 at 5445.992 kb on + strand, within Psyr_4585 at 5445.995 kb on + strand, within Psyr_4585 at 5445.995 kb on + strand, within Psyr_4585 at 5445.995 kb on + strand, within Psyr_4585 at 5445.996 kb on - strand, within Psyr_4585 at 5446.034 kb on - strand, within Psyr_4585 at 5446.034 kb on - strand, within Psyr_4585 at 5446.124 kb on + strand, within Psyr_4585 at 5446.249 kb on + strand, within Psyr_4585 at 5446.250 kb on - strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.352 kb on + strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.353 kb on - strand, within Psyr_4585 at 5446.401 kb on + strand, within Psyr_4585 at 5446.401 kb on + strand, within Psyr_4585 at 5446.460 kb on + strand, within Psyr_4585 at 5446.491 kb on + strand, within Psyr_4585 at 5446.491 kb on + strand, within Psyr_4585 at 5446.491 kb on + strand, within Psyr_4585 at 5446.491 kb on + strand, within Psyr_4585 at 5446.492 kb on - strand, within Psyr_4585 at 5446.590 kb on + strand, within Psyr_4585 at 5446.637 kb on + strand, within Psyr_4585 at 5446.637 kb on + strand, within Psyr_4585 at 5446.725 kb on + strand, within Psyr_4585 at 5446.725 kb on + strand, within Psyr_4585 at 5446.725 kb on + strand, within Psyr_4585 at 5446.726 kb on - strand, within Psyr_4585 at 5446.726 kb on - strand, within Psyr_4585 at 5446.756 kb on + strand, within Psyr_4585 at 5446.756 kb on + strand, within Psyr_4585 at 5446.756 kb on + strand, within Psyr_4585 at 5446.756 kb on + strand, within Psyr_4585 at 5446.756 kb on + strand, within Psyr_4585 at 5446.756 kb on + strand, within Psyr_4585 at 5446.756 kb on + strand, within Psyr_4585 at 5446.757 kb on - strand, within Psyr_4585 at 5446.757 kb on - strand, within Psyr_4585 at 5446.757 kb on - strand, within Psyr_4585 at 5446.757 kb on - strand, within Psyr_4585 at 5446.757 kb on - strand, within Psyr_4585
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM remove 5,444,513 + +0.2 5,444,513 + -0.3 5,444,513 + +0.2 5,444,514 - +0.1 5,444,558 + -1.0 5,444,599 - -0.8 5,444,799 + Psyr_4583 0.42 -1.6 5,444,800 - Psyr_4583 0.42 +0.1 5,444,800 - Psyr_4583 0.42 -2.5 5,444,800 - Psyr_4583 0.42 +0.3 5,444,907 + Psyr_4583 0.62 +0.3 5,444,907 + Psyr_4583 0.62 +1.8 5,444,908 - Psyr_4583 0.62 -0.4 5,444,919 + Psyr_4583 0.64 -0.3 5,444,919 + Psyr_4583 0.64 -1.0 5,444,919 + Psyr_4583 0.64 +0.4 5,444,919 + Psyr_4583 0.64 -0.7 5,444,920 - Psyr_4583 0.64 +0.6 5,444,920 - Psyr_4583 0.64 +1.6 5,444,933 + Psyr_4583 0.66 -0.1 5,444,934 - Psyr_4583 0.67 +0.5 5,444,946 + Psyr_4583 0.69 -0.1 5,444,946 + Psyr_4583 0.69 -0.4 5,444,947 - Psyr_4583 0.69 +0.4 5,444,947 - Psyr_4583 0.69 -0.7 5,444,947 - Psyr_4583 0.69 +0.3 5,444,972 + Psyr_4583 0.74 -0.1 5,444,973 - Psyr_4583 0.74 +1.2 5,444,973 - Psyr_4583 0.74 -0.3 5,445,092 + -0.1 5,445,092 + +0.2 5,445,101 + +2.2 5,445,129 - -0.9 5,445,141 + +0.5 5,445,155 - -0.5 5,445,168 + +0.3 5,445,187 - -0.7 5,445,187 - -0.5 5,445,233 + +0.4 5,445,233 + -0.4 5,445,233 + -2.0 5,445,233 + -0.4 5,445,234 - -0.4 5,445,234 - -0.8 5,445,234 - +0.2 5,445,234 - -1.0 5,445,234 - -0.3 5,445,234 - +0.2 5,445,322 - Psyr_4584 0.16 -1.0 5,445,322 - Psyr_4584 0.16 -0.8 5,445,385 - Psyr_4584 0.27 -1.6 5,445,400 + Psyr_4584 0.30 -0.2 5,445,400 + Psyr_4584 0.30 +0.2 5,445,400 + Psyr_4584 0.30 +0.1 5,445,400 + Psyr_4584 0.30 -0.5 5,445,401 - Psyr_4584 0.30 -1.5 5,445,401 - Psyr_4584 0.30 -0.2 5,445,401 - Psyr_4584 0.30 -1.8 5,445,401 - Psyr_4584 0.30 +0.2 5,445,401 - Psyr_4584 0.30 -1.2 5,445,401 - Psyr_4584 0.30 -1.3 5,445,401 - Psyr_4584 0.30 -0.7 5,445,419 + Psyr_4584 0.33 -0.2 5,445,420 - Psyr_4584 0.34 -0.2 5,445,455 + Psyr_4584 0.40 +1.6 5,445,456 - Psyr_4584 0.40 -0.6 5,445,510 + Psyr_4584 0.49 +0.3 5,445,510 + Psyr_4584 0.49 -0.4 5,445,511 - Psyr_4584 0.50 -1.2 5,445,511 - Psyr_4584 0.50 +0.9 5,445,511 - Psyr_4584 0.50 -0.7 5,445,511 - Psyr_4584 0.50 -1.3 5,445,513 + Psyr_4584 0.50 +0.4 5,445,513 + Psyr_4584 0.50 +0.2 5,445,513 + Psyr_4584 0.50 +0.5 5,445,513 + Psyr_4584 0.50 +1.8 5,445,514 - Psyr_4584 0.50 -1.2 5,445,514 - Psyr_4584 0.50 -1.4 5,445,514 - Psyr_4584 0.50 -0.4 5,445,514 - Psyr_4584 0.50 -1.8 5,445,514 - Psyr_4584 0.50 +0.6 5,445,514 - Psyr_4584 0.50 -0.5 5,445,514 - Psyr_4584 0.50 -1.6 5,445,600 + Psyr_4584 0.65 -3.0 5,445,709 + Psyr_4584 0.84 -0.0 5,445,709 + Psyr_4584 0.84 +0.8 5,445,710 - Psyr_4584 0.85 -1.6 5,445,779 + -0.7 5,445,779 + +0.6 5,445,779 + -0.4 5,445,779 + +0.1 5,445,780 - -1.8 5,445,780 - -0.1 5,445,780 - -0.5 5,445,786 + -1.4 5,445,786 + -0.8 5,445,786 + +0.4 5,445,786 + -0.7 5,445,786 + +0.3 5,445,786 + -0.1 5,445,786 + -1.4 5,445,786 + +0.6 5,445,786 + -0.6 5,445,787 - -0.8 5,445,787 - -1.3 5,445,787 - -0.2 5,445,787 - -0.9 5,445,790 + -0.0 5,445,791 - -1.0 5,445,791 - -0.8 5,445,791 - -0.3 5,445,791 - -1.0 5,445,796 + +0.1 5,445,796 + +1.2 5,445,796 + +1.3 5,445,797 - -2.4 5,445,797 - -1.3 5,445,797 - +0.1 5,445,900 + +0.3 5,445,917 + +1.2 5,445,928 + -0.9 5,445,928 + +0.3 5,445,929 - -0.5 5,445,933 + -0.0 5,445,933 + +0.0 5,445,933 + +0.0 5,445,933 + +0.7 5,445,934 - -1.2 5,445,934 - -0.7 5,445,934 - -0.7 5,445,934 - -1.6 5,445,934 - -1.1 5,445,951 + Psyr_4585 0.11 -0.5 5,445,992 + Psyr_4585 0.14 +0.1 5,445,992 + Psyr_4585 0.14 -0.4 5,445,992 + Psyr_4585 0.14 +0.2 5,445,992 + Psyr_4585 0.14 +1.5 5,445,992 + Psyr_4585 0.14 -0.2 5,445,995 + Psyr_4585 0.14 +0.5 5,445,995 + Psyr_4585 0.14 -0.3 5,445,995 + Psyr_4585 0.14 -0.3 5,445,996 - Psyr_4585 0.15 -1.2 5,446,034 - Psyr_4585 0.17 -0.7 5,446,034 - Psyr_4585 0.17 -1.6 5,446,124 + Psyr_4585 0.24 +0.3 5,446,249 + Psyr_4585 0.34 +0.4 5,446,250 - Psyr_4585 0.34 -0.4 5,446,352 + Psyr_4585 0.41 +0.8 5,446,352 + Psyr_4585 0.41 -0.6 5,446,352 + Psyr_4585 0.41 +0.2 5,446,352 + Psyr_4585 0.41 +1.3 5,446,352 + Psyr_4585 0.41 +0.3 5,446,352 + Psyr_4585 0.41 +0.1 5,446,352 + Psyr_4585 0.41 -1.0 5,446,352 + Psyr_4585 0.41 -0.3 5,446,352 + Psyr_4585 0.41 +1.0 5,446,352 + Psyr_4585 0.41 +0.7 5,446,352 + Psyr_4585 0.41 -0.6 5,446,352 + Psyr_4585 0.41 -0.6 5,446,352 + Psyr_4585 0.41 -0.4 5,446,352 + Psyr_4585 0.41 +0.8 5,446,353 - Psyr_4585 0.41 -0.7 5,446,353 - Psyr_4585 0.41 -0.3 5,446,353 - Psyr_4585 0.41 -0.0 5,446,353 - Psyr_4585 0.41 -1.4 5,446,353 - Psyr_4585 0.41 -1.0 5,446,353 - Psyr_4585 0.41 -1.0 5,446,353 - Psyr_4585 0.41 -0.8 5,446,353 - Psyr_4585 0.41 +0.1 5,446,353 - Psyr_4585 0.41 -0.5 5,446,353 - Psyr_4585 0.41 +0.5 5,446,353 - Psyr_4585 0.41 -0.2 5,446,353 - Psyr_4585 0.41 -1.1 5,446,353 - Psyr_4585 0.41 -1.1 5,446,353 - Psyr_4585 0.41 -0.3 5,446,353 - Psyr_4585 0.41 +0.4 5,446,353 - Psyr_4585 0.41 -0.6 5,446,353 - Psyr_4585 0.41 -0.0 5,446,353 - Psyr_4585 0.41 -2.0 5,446,401 + Psyr_4585 0.45 +0.6 5,446,401 + Psyr_4585 0.45 -1.6 5,446,460 + Psyr_4585 0.50 +0.9 5,446,491 + Psyr_4585 0.52 -0.8 5,446,491 + Psyr_4585 0.52 +0.2 5,446,491 + Psyr_4585 0.52 -0.1 5,446,491 + Psyr_4585 0.52 -1.2 5,446,492 - Psyr_4585 0.52 -0.6 5,446,590 + Psyr_4585 0.59 -0.1 5,446,637 + Psyr_4585 0.63 +0.4 5,446,637 + Psyr_4585 0.63 -1.6 5,446,725 + Psyr_4585 0.70 +0.2 5,446,725 + Psyr_4585 0.70 +0.3 5,446,725 + Psyr_4585 0.70 -0.3 5,446,726 - Psyr_4585 0.70 -1.4 5,446,726 - Psyr_4585 0.70 -0.5 5,446,756 + Psyr_4585 0.72 +1.2 5,446,756 + Psyr_4585 0.72 -0.8 5,446,756 + Psyr_4585 0.72 -0.9 5,446,756 + Psyr_4585 0.72 +0.4 5,446,756 + Psyr_4585 0.72 +0.3 5,446,756 + Psyr_4585 0.72 -1.4 5,446,756 + Psyr_4585 0.72 -0.5 5,446,757 - Psyr_4585 0.72 -1.4 5,446,757 - Psyr_4585 0.72 -1.1 5,446,757 - Psyr_4585 0.72 -0.6 5,446,757 - Psyr_4585 0.72 -0.4 5,446,757 - Psyr_4585 0.72 +0.4
Or see this region's nucleotide sequence