Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3696

Experiment: KB with Cotarnine Chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3695 and Psyr_3696 are separated by 156 nucleotidesPsyr_3696 and Psyr_3697 overlap by 1 nucleotides Psyr_3695: Psyr_3695 - RelA/SpoT protein, at 4,380,642 to 4,382,885 _3695 Psyr_3696: Psyr_3696 - 23S rRNA m(5)U-1939 methyltransferase, at 4,383,042 to 4,384,397 _3696 Psyr_3697: Psyr_3697 - cysteine synthase, at 4,384,397 to 4,385,338 _3697 Position (kb) 4383 4384 4385Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4382.083 kb on + strand, within Psyr_3695at 4382.083 kb on + strand, within Psyr_3695at 4382.083 kb on + strand, within Psyr_3695at 4382.083 kb on + strand, within Psyr_3695at 4382.083 kb on + strand, within Psyr_3695at 4382.083 kb on + strand, within Psyr_3695at 4382.083 kb on + strand, within Psyr_3695at 4382.083 kb on + strand, within Psyr_3695at 4382.083 kb on + strand, within Psyr_3695at 4382.084 kb on - strand, within Psyr_3695at 4382.084 kb on - strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.087 kb on + strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.088 kb on - strand, within Psyr_3695at 4382.222 kb on - strand, within Psyr_3695at 4382.222 kb on - strand, within Psyr_3695at 4382.222 kb on - strand, within Psyr_3695at 4382.273 kb on + strand, within Psyr_3695at 4382.308 kb on + strand, within Psyr_3695at 4382.308 kb on + strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.309 kb on - strand, within Psyr_3695at 4382.384 kb on + strand, within Psyr_3695at 4382.384 kb on + strand, within Psyr_3695at 4382.385 kb on - strand, within Psyr_3695at 4382.385 kb on - strandat 4382.813 kb on + strandat 4382.813 kb on + strandat 4382.813 kb on + strandat 4382.813 kb on + strandat 4382.813 kb on + strandat 4382.814 kb on - strandat 4382.814 kb on - strandat 4382.814 kb on - strandat 4382.814 kb on - strandat 4382.814 kb on - strandat 4382.814 kb on - strandat 4382.880 kb on + strandat 4382.881 kb on - strandat 4382.892 kb on + strandat 4382.893 kb on - strandat 4383.047 kb on + strandat 4383.047 kb on + strandat 4383.047 kb on + strandat 4383.047 kb on + strandat 4383.047 kb on + strandat 4383.047 kb on + strandat 4383.048 kb on - strandat 4383.048 kb on - strandat 4383.061 kb on - strandat 4383.098 kb on + strandat 4383.120 kb on + strandat 4383.187 kb on + strand, within Psyr_3696at 4383.187 kb on + strand, within Psyr_3696at 4383.188 kb on - strand, within Psyr_3696at 4383.188 kb on - strand, within Psyr_3696at 4383.188 kb on - strand, within Psyr_3696at 4383.353 kb on + strand, within Psyr_3696at 4383.353 kb on + strand, within Psyr_3696at 4383.354 kb on - strand, within Psyr_3696at 4383.849 kb on + strand, within Psyr_3696at 4383.849 kb on + strand, within Psyr_3696at 4383.850 kb on - strand, within Psyr_3696at 4383.850 kb on - strand, within Psyr_3696at 4384.120 kb on + strand, within Psyr_3696at 4384.238 kb on + strandat 4384.259 kb on + strand, within Psyr_3696at 4385.334 kb on - strandat 4385.334 kb on - strandat 4385.338 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM
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4,382,083 + Psyr_3695 0.64 +1.1
4,382,083 + Psyr_3695 0.64 -1.3
4,382,083 + Psyr_3695 0.64 -0.6
4,382,083 + Psyr_3695 0.64 +0.2
4,382,083 + Psyr_3695 0.64 -1.3
4,382,083 + Psyr_3695 0.64 +3.4
4,382,083 + Psyr_3695 0.64 +0.8
4,382,083 + Psyr_3695 0.64 -1.7
4,382,083 + Psyr_3695 0.64 +0.3
4,382,084 - Psyr_3695 0.64 -0.6
4,382,084 - Psyr_3695 0.64 -2.5
4,382,087 + Psyr_3695 0.64 +2.1
4,382,087 + Psyr_3695 0.64 -0.3
4,382,087 + Psyr_3695 0.64 +0.7
4,382,087 + Psyr_3695 0.64 -0.3
4,382,087 + Psyr_3695 0.64 -0.0
4,382,087 + Psyr_3695 0.64 -0.0
4,382,087 + Psyr_3695 0.64 -0.4
4,382,087 + Psyr_3695 0.64 -0.6
4,382,087 + Psyr_3695 0.64 +0.4
4,382,088 - Psyr_3695 0.64 +0.7
4,382,088 - Psyr_3695 0.64 +0.8
4,382,088 - Psyr_3695 0.64 -2.1
4,382,088 - Psyr_3695 0.64 +1.1
4,382,088 - Psyr_3695 0.64 -0.9
4,382,088 - Psyr_3695 0.64 +0.1
4,382,088 - Psyr_3695 0.64 -1.3
4,382,088 - Psyr_3695 0.64 +0.3
4,382,088 - Psyr_3695 0.64 -0.4
4,382,222 - Psyr_3695 0.70 -0.1
4,382,222 - Psyr_3695 0.70 +1.4
4,382,222 - Psyr_3695 0.70 -1.3
4,382,273 + Psyr_3695 0.73 -0.3
4,382,308 + Psyr_3695 0.74 -0.9
4,382,308 + Psyr_3695 0.74 -0.9
4,382,309 - Psyr_3695 0.74 -0.7
4,382,309 - Psyr_3695 0.74 -1.6
4,382,309 - Psyr_3695 0.74 +0.5
4,382,309 - Psyr_3695 0.74 +0.3
4,382,309 - Psyr_3695 0.74 +0.3
4,382,309 - Psyr_3695 0.74 +0.1
4,382,309 - Psyr_3695 0.74 -1.2
4,382,309 - Psyr_3695 0.74 +0.3
4,382,309 - Psyr_3695 0.74 -0.6
4,382,309 - Psyr_3695 0.74 -0.1
4,382,384 + Psyr_3695 0.78 -0.7
4,382,384 + Psyr_3695 0.78 -1.3
4,382,385 - Psyr_3695 0.78 -0.3
4,382,385 - -1.7
4,382,813 + +0.1
4,382,813 + -1.2
4,382,813 + -0.8
4,382,813 + -0.5
4,382,813 + -2.2
4,382,814 - -1.5
4,382,814 - -1.5
4,382,814 - -0.6
4,382,814 - +0.5
4,382,814 - +0.2
4,382,814 - -0.9
4,382,880 + +1.1
4,382,881 - -1.5
4,382,892 + +0.3
4,382,893 - +0.9
4,383,047 + -0.0
4,383,047 + -0.9
4,383,047 + -0.9
4,383,047 + -0.6
4,383,047 + +0.2
4,383,047 + -0.0
4,383,048 - +0.4
4,383,048 - +0.9
4,383,061 - -0.7
4,383,098 + +1.1
4,383,120 + -2.0
4,383,187 + Psyr_3696 0.11 -0.1
4,383,187 + Psyr_3696 0.11 -0.7
4,383,188 - Psyr_3696 0.11 -0.5
4,383,188 - Psyr_3696 0.11 +0.3
4,383,188 - Psyr_3696 0.11 -0.1
4,383,353 + Psyr_3696 0.23 -0.7
4,383,353 + Psyr_3696 0.23 -1.2
4,383,354 - Psyr_3696 0.23 -1.2
4,383,849 + Psyr_3696 0.60 -1.2
4,383,849 + Psyr_3696 0.60 +0.1
4,383,850 - Psyr_3696 0.60 -2.8
4,383,850 - Psyr_3696 0.60 +2.1
4,384,120 + Psyr_3696 0.79 -0.5
4,384,238 + -1.5
4,384,259 + Psyr_3696 0.90 -1.2
4,385,334 - +0.3
4,385,334 - +1.1
4,385,338 + -2.4

Or see this region's nucleotide sequence