Experiment: KB with Cotarnine Chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3130 and Psyr_3131 overlap by 4 nucleotides Psyr_3131 and Psyr_3132 overlap by 4 nucleotides
Psyr_3130: Psyr_3130 - Secretion protein HlyD, at 3,753,133 to 3,754,320
_3130
Psyr_3131: Psyr_3131 - Secretion protein HlyD, at 3,754,317 to 3,755,408
_3131
Psyr_3132: Psyr_3132 - Acriflavin resistance protein, at 3,755,405 to 3,758,443
_3132
Position (kb)
3754
3755
3756 Strain fitness (log2 ratio)
-2
-1
0
1 at 3753.324 kb on - strand, within Psyr_3130 at 3753.559 kb on + strand, within Psyr_3130 at 3753.559 kb on + strand, within Psyr_3130 at 3753.559 kb on + strand, within Psyr_3130 at 3753.560 kb on - strand, within Psyr_3130 at 3753.594 kb on + strand, within Psyr_3130 at 3753.594 kb on + strand, within Psyr_3130 at 3753.700 kb on + strand, within Psyr_3130 at 3753.700 kb on + strand, within Psyr_3130 at 3753.703 kb on - strand, within Psyr_3130 at 3753.745 kb on + strand, within Psyr_3130 at 3754.330 kb on - strand at 3754.450 kb on + strand, within Psyr_3131 at 3754.451 kb on - strand, within Psyr_3131 at 3754.506 kb on + strand, within Psyr_3131 at 3754.713 kb on + strand, within Psyr_3131 at 3754.713 kb on + strand, within Psyr_3131 at 3754.713 kb on + strand, within Psyr_3131 at 3754.713 kb on + strand, within Psyr_3131 at 3754.713 kb on + strand, within Psyr_3131 at 3754.713 kb on + strand, within Psyr_3131 at 3754.713 kb on + strand, within Psyr_3131 at 3754.714 kb on - strand, within Psyr_3131 at 3754.714 kb on - strand, within Psyr_3131 at 3754.714 kb on - strand, within Psyr_3131 at 3754.714 kb on - strand, within Psyr_3131 at 3754.833 kb on + strand, within Psyr_3131 at 3755.220 kb on + strand, within Psyr_3131 at 3755.220 kb on + strand, within Psyr_3131 at 3755.220 kb on + strand, within Psyr_3131 at 3755.221 kb on - strand, within Psyr_3131 at 3755.279 kb on - strand, within Psyr_3131 at 3755.338 kb on + strand at 3755.338 kb on + strand at 3755.462 kb on + strand at 3755.463 kb on - strand at 3755.463 kb on - strand at 3755.463 kb on - strand at 3755.651 kb on + strand at 3755.652 kb on - strand at 3755.663 kb on + strand at 3755.664 kb on - strand at 3755.843 kb on + strand, within Psyr_3132 at 3755.843 kb on + strand, within Psyr_3132 at 3755.843 kb on + strand, within Psyr_3132 at 3755.843 kb on + strand, within Psyr_3132 at 3755.844 kb on - strand, within Psyr_3132 at 3755.844 kb on - strand, within Psyr_3132 at 3755.844 kb on - strand, within Psyr_3132 at 3755.844 kb on - strand, within Psyr_3132 at 3755.889 kb on - strand, within Psyr_3132 at 3755.889 kb on - strand, within Psyr_3132 at 3755.901 kb on + strand, within Psyr_3132 at 3755.902 kb on - strand, within Psyr_3132 at 3755.902 kb on - strand, within Psyr_3132 at 3755.972 kb on + strand, within Psyr_3132 at 3755.973 kb on - strand, within Psyr_3132 at 3755.973 kb on - strand, within Psyr_3132
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM remove 3,753,324 - Psyr_3130 0.16 -0.2 3,753,559 + Psyr_3130 0.36 -1.7 3,753,559 + Psyr_3130 0.36 -0.0 3,753,559 + Psyr_3130 0.36 -0.5 3,753,560 - Psyr_3130 0.36 -0.6 3,753,594 + Psyr_3130 0.39 +0.4 3,753,594 + Psyr_3130 0.39 +0.4 3,753,700 + Psyr_3130 0.48 -0.7 3,753,700 + Psyr_3130 0.48 +0.5 3,753,703 - Psyr_3130 0.48 +0.6 3,753,745 + Psyr_3130 0.52 +0.6 3,754,330 - +0.3 3,754,450 + Psyr_3131 0.12 -1.2 3,754,451 - Psyr_3131 0.12 -1.0 3,754,506 + Psyr_3131 0.17 +0.6 3,754,713 + Psyr_3131 0.36 -1.8 3,754,713 + Psyr_3131 0.36 -0.2 3,754,713 + Psyr_3131 0.36 -1.4 3,754,713 + Psyr_3131 0.36 -0.4 3,754,713 + Psyr_3131 0.36 +1.0 3,754,713 + Psyr_3131 0.36 -0.3 3,754,713 + Psyr_3131 0.36 -0.6 3,754,714 - Psyr_3131 0.36 +0.6 3,754,714 - Psyr_3131 0.36 -0.3 3,754,714 - Psyr_3131 0.36 -0.6 3,754,714 - Psyr_3131 0.36 -0.6 3,754,833 + Psyr_3131 0.47 -0.8 3,755,220 + Psyr_3131 0.83 -1.2 3,755,220 + Psyr_3131 0.83 -0.1 3,755,220 + Psyr_3131 0.83 -0.4 3,755,221 - Psyr_3131 0.83 -0.4 3,755,279 - Psyr_3131 0.88 -0.4 3,755,338 + +1.0 3,755,338 + -1.0 3,755,462 + +1.1 3,755,463 - -1.8 3,755,463 - +0.6 3,755,463 - +0.1 3,755,651 + -0.9 3,755,652 - -0.0 3,755,663 + +0.6 3,755,664 - -0.4 3,755,843 + Psyr_3132 0.14 -0.7 3,755,843 + Psyr_3132 0.14 -0.3 3,755,843 + Psyr_3132 0.14 -0.8 3,755,843 + Psyr_3132 0.14 -0.5 3,755,844 - Psyr_3132 0.14 -1.1 3,755,844 - Psyr_3132 0.14 -0.5 3,755,844 - Psyr_3132 0.14 +0.3 3,755,844 - Psyr_3132 0.14 -0.1 3,755,889 - Psyr_3132 0.16 +0.9 3,755,889 - Psyr_3132 0.16 +1.5 3,755,901 + Psyr_3132 0.16 +0.2 3,755,902 - Psyr_3132 0.16 -0.4 3,755,902 - Psyr_3132 0.16 -0.7 3,755,972 + Psyr_3132 0.19 -0.3 3,755,973 - Psyr_3132 0.19 +1.2 3,755,973 - Psyr_3132 0.19 -0.1
Or see this region's nucleotide sequence