Experiment: KB with Cotarnine Chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2986 and Psyr_2987 are separated by 51 nucleotides Psyr_2987 and Psyr_2988 overlap by 8 nucleotides
Psyr_2986: Psyr_2986 - Glycoside hydrolase, family 15, at 3,576,736 to 3,578,553
_2986
Psyr_2987: Psyr_2987 - Cof protein:HAD-superfamily hydrolase, subfamily IIB, at 3,578,605 to 3,579,414
_2987
Psyr_2988: Psyr_2988 - glucose-6-phosphate 1-dehydrogenase, at 3,579,407 to 3,580,939
_2988
Position (kb)
3578
3579
3580 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3577.610 kb on + strand, within Psyr_2986 at 3577.611 kb on - strand, within Psyr_2986 at 3577.643 kb on + strand at 3577.643 kb on + strand, within Psyr_2986 at 3577.643 kb on + strand, within Psyr_2986 at 3577.643 kb on + strand, within Psyr_2986 at 3577.644 kb on - strand, within Psyr_2986 at 3577.722 kb on - strand, within Psyr_2986 at 3577.776 kb on - strand, within Psyr_2986 at 3577.851 kb on + strand, within Psyr_2986 at 3577.859 kb on + strand, within Psyr_2986 at 3577.859 kb on + strand, within Psyr_2986 at 3577.859 kb on + strand, within Psyr_2986 at 3577.860 kb on - strand, within Psyr_2986 at 3577.878 kb on + strand, within Psyr_2986 at 3577.878 kb on + strand, within Psyr_2986 at 3577.895 kb on - strand, within Psyr_2986 at 3577.895 kb on - strand, within Psyr_2986 at 3578.531 kb on + strand at 3578.531 kb on + strand at 3578.621 kb on + strand at 3578.621 kb on + strand at 3578.661 kb on + strand at 3578.668 kb on - strand at 3578.801 kb on + strand, within Psyr_2987 at 3578.801 kb on + strand, within Psyr_2987 at 3578.861 kb on + strand, within Psyr_2987 at 3578.865 kb on - strand, within Psyr_2987 at 3578.985 kb on - strand, within Psyr_2987 at 3579.011 kb on + strand, within Psyr_2987 at 3579.011 kb on + strand, within Psyr_2987 at 3579.011 kb on + strand, within Psyr_2987 at 3579.011 kb on + strand, within Psyr_2987 at 3579.011 kb on + strand, within Psyr_2987 at 3579.012 kb on - strand, within Psyr_2987 at 3579.012 kb on - strand, within Psyr_2987 at 3579.012 kb on - strand, within Psyr_2987 at 3579.047 kb on + strand, within Psyr_2987 at 3579.397 kb on + strand at 3579.397 kb on + strand at 3579.397 kb on + strand at 3579.398 kb on - strand at 3579.490 kb on - strand at 3579.490 kb on - strand at 3579.606 kb on + strand, within Psyr_2988 at 3579.606 kb on + strand, within Psyr_2988 at 3579.607 kb on - strand, within Psyr_2988 at 3579.607 kb on - strand, within Psyr_2988 at 3579.607 kb on - strand, within Psyr_2988 at 3579.607 kb on - strand, within Psyr_2988 at 3579.658 kb on - strand, within Psyr_2988 at 3579.658 kb on - strand, within Psyr_2988 at 3579.658 kb on - strand, within Psyr_2988 at 3579.763 kb on - strand, within Psyr_2988 at 3579.763 kb on - strand, within Psyr_2988 at 3579.856 kb on + strand, within Psyr_2988 at 3579.856 kb on + strand, within Psyr_2988 at 3579.857 kb on - strand, within Psyr_2988 at 3579.857 kb on - strand, within Psyr_2988 at 3579.857 kb on - strand, within Psyr_2988 at 3579.857 kb on - strand, within Psyr_2988 at 3579.857 kb on - strand, within Psyr_2988 at 3579.930 kb on + strand, within Psyr_2988 at 3579.930 kb on + strand, within Psyr_2988 at 3579.930 kb on + strand, within Psyr_2988 at 3579.930 kb on + strand, within Psyr_2988 at 3579.931 kb on - strand, within Psyr_2988 at 3579.931 kb on - strand, within Psyr_2988 at 3579.931 kb on - strand, within Psyr_2988 at 3579.931 kb on - strand, within Psyr_2988 at 3579.931 kb on - strand, within Psyr_2988 at 3579.931 kb on - strand, within Psyr_2988 at 3580.015 kb on - strand, within Psyr_2988 at 3580.226 kb on + strand, within Psyr_2988 at 3580.263 kb on + strand, within Psyr_2988 at 3580.263 kb on + strand, within Psyr_2988 at 3580.263 kb on + strand, within Psyr_2988 at 3580.264 kb on - strand, within Psyr_2988 at 3580.264 kb on - strand, within Psyr_2988
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM remove 3,577,610 + Psyr_2986 0.48 -0.4 3,577,611 - Psyr_2986 0.48 +0.7 3,577,643 + -0.5 3,577,643 + Psyr_2986 0.50 +0.6 3,577,643 + Psyr_2986 0.50 -0.2 3,577,643 + Psyr_2986 0.50 +0.3 3,577,644 - Psyr_2986 0.50 +0.5 3,577,722 - Psyr_2986 0.54 -2.5 3,577,776 - Psyr_2986 0.57 -1.3 3,577,851 + Psyr_2986 0.61 +1.4 3,577,859 + Psyr_2986 0.62 +1.2 3,577,859 + Psyr_2986 0.62 -1.7 3,577,859 + Psyr_2986 0.62 +1.0 3,577,860 - Psyr_2986 0.62 +2.0 3,577,878 + Psyr_2986 0.63 +0.6 3,577,878 + Psyr_2986 0.63 -0.8 3,577,895 - Psyr_2986 0.64 +0.1 3,577,895 - Psyr_2986 0.64 -1.4 3,578,531 + -1.9 3,578,531 + -0.2 3,578,621 + -1.5 3,578,621 + +0.9 3,578,661 + +0.3 3,578,668 - +1.5 3,578,801 + Psyr_2987 0.24 -1.1 3,578,801 + Psyr_2987 0.24 -0.3 3,578,861 + Psyr_2987 0.32 -0.5 3,578,865 - Psyr_2987 0.32 +0.5 3,578,985 - Psyr_2987 0.47 -1.9 3,579,011 + Psyr_2987 0.50 +0.2 3,579,011 + Psyr_2987 0.50 -2.5 3,579,011 + Psyr_2987 0.50 -0.4 3,579,011 + Psyr_2987 0.50 -0.3 3,579,011 + Psyr_2987 0.50 -1.0 3,579,012 - Psyr_2987 0.50 -0.8 3,579,012 - Psyr_2987 0.50 -0.3 3,579,012 - Psyr_2987 0.50 +1.6 3,579,047 + Psyr_2987 0.55 +0.0 3,579,397 + +0.2 3,579,397 + -0.9 3,579,397 + -0.4 3,579,398 - -1.1 3,579,490 - +1.0 3,579,490 - +0.8 3,579,606 + Psyr_2988 0.13 -0.6 3,579,606 + Psyr_2988 0.13 +0.6 3,579,607 - Psyr_2988 0.13 -3.1 3,579,607 - Psyr_2988 0.13 +2.4 3,579,607 - Psyr_2988 0.13 +2.3 3,579,607 - Psyr_2988 0.13 -1.2 3,579,658 - Psyr_2988 0.16 -1.0 3,579,658 - Psyr_2988 0.16 -0.4 3,579,658 - Psyr_2988 0.16 +1.5 3,579,763 - Psyr_2988 0.23 -0.1 3,579,763 - Psyr_2988 0.23 +1.7 3,579,856 + Psyr_2988 0.29 +0.0 3,579,856 + Psyr_2988 0.29 +0.6 3,579,857 - Psyr_2988 0.29 +0.0 3,579,857 - Psyr_2988 0.29 -0.8 3,579,857 - Psyr_2988 0.29 +0.6 3,579,857 - Psyr_2988 0.29 +0.6 3,579,857 - Psyr_2988 0.29 +0.6 3,579,930 + Psyr_2988 0.34 +1.4 3,579,930 + Psyr_2988 0.34 -0.3 3,579,930 + Psyr_2988 0.34 +0.0 3,579,930 + Psyr_2988 0.34 -0.2 3,579,931 - Psyr_2988 0.34 +0.3 3,579,931 - Psyr_2988 0.34 +1.7 3,579,931 - Psyr_2988 0.34 +1.0 3,579,931 - Psyr_2988 0.34 -0.4 3,579,931 - Psyr_2988 0.34 -0.1 3,579,931 - Psyr_2988 0.34 -0.4 3,580,015 - Psyr_2988 0.40 -0.8 3,580,226 + Psyr_2988 0.53 +0.5 3,580,263 + Psyr_2988 0.56 +0.4 3,580,263 + Psyr_2988 0.56 +0.3 3,580,263 + Psyr_2988 0.56 +1.2 3,580,264 - Psyr_2988 0.56 -0.6 3,580,264 - Psyr_2988 0.56 +0.6
Or see this region's nucleotide sequence