Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2787

Experiment: KB with Cotarnine Chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2785 and Psyr_2786 overlap by 4 nucleotidesPsyr_2786 and Psyr_2787 are separated by 331 nucleotidesPsyr_2787 and Psyr_2788 are separated by 3 nucleotidesPsyr_2788 and Psyr_2789 are separated by 24 nucleotides Psyr_2785: Psyr_2785 - conserved hypothetical protein, at 3,370,321 to 3,370,977 _2785 Psyr_2786: Psyr_2786 - phage-related conserved hypothetical protein, at 3,370,974 to 3,371,342 _2786 Psyr_2787: Psyr_2787 - hypothetical protein, at 3,371,674 to 3,372,174 _2787 Psyr_2788: Psyr_2788 - hypothetical protein, at 3,372,178 to 3,372,627 _2788 Psyr_2789: Psyr_2789 - conserved hypothetical protein, at 3,372,652 to 3,373,602 _2789 Position (kb) 3371 3372 3373Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3370.676 kb on + strand, within Psyr_2785at 3370.677 kb on - strand, within Psyr_2785at 3370.677 kb on - strand, within Psyr_2785at 3370.876 kb on + strand, within Psyr_2785at 3370.877 kb on - strand, within Psyr_2785at 3370.877 kb on - strand, within Psyr_2785at 3370.997 kb on - strandat 3371.199 kb on + strand, within Psyr_2786at 3371.199 kb on + strand, within Psyr_2786at 3371.200 kb on - strand, within Psyr_2786at 3371.200 kb on - strand, within Psyr_2786at 3371.200 kb on - strand, within Psyr_2786at 3371.276 kb on + strand, within Psyr_2786at 3371.277 kb on - strand, within Psyr_2786at 3371.301 kb on + strand, within Psyr_2786at 3371.301 kb on + strand, within Psyr_2786at 3371.301 kb on + strand, within Psyr_2786at 3371.302 kb on - strand, within Psyr_2786at 3371.332 kb on + strandat 3371.346 kb on + strandat 3371.346 kb on + strandat 3371.346 kb on + strandat 3371.346 kb on + strandat 3371.347 kb on - strandat 3371.347 kb on - strandat 3371.347 kb on - strandat 3371.397 kb on + strandat 3371.397 kb on + strandat 3371.398 kb on - strandat 3371.413 kb on + strandat 3371.413 kb on + strandat 3371.414 kb on - strandat 3371.425 kb on + strandat 3371.425 kb on + strandat 3371.425 kb on + strandat 3371.448 kb on + strandat 3371.448 kb on + strandat 3371.448 kb on + strandat 3371.448 kb on + strandat 3371.451 kb on + strandat 3371.452 kb on - strandat 3371.531 kb on + strandat 3371.531 kb on + strandat 3371.531 kb on + strandat 3371.531 kb on + strandat 3371.532 kb on - strandat 3371.532 kb on - strandat 3371.532 kb on - strandat 3371.637 kb on + strandat 3371.638 kb on - strandat 3371.640 kb on - strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.644 kb on + strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.645 kb on - strandat 3371.675 kb on + strandat 3371.675 kb on + strandat 3371.675 kb on + strandat 3371.676 kb on - strandat 3371.676 kb on - strandat 3371.676 kb on - strandat 3371.712 kb on - strandat 3371.789 kb on + strand, within Psyr_2787at 3371.850 kb on + strand, within Psyr_2787at 3371.901 kb on - strand, within Psyr_2787at 3372.102 kb on - strand, within Psyr_2787at 3372.128 kb on + strandat 3372.128 kb on + strandat 3372.129 kb on - strandat 3372.179 kb on + strandat 3372.179 kb on + strandat 3372.179 kb on + strandat 3372.180 kb on - strandat 3372.180 kb on - strandat 3372.180 kb on - strandat 3372.180 kb on - strandat 3372.180 kb on - strandat 3372.253 kb on + strand, within Psyr_2788at 3372.253 kb on + strand, within Psyr_2788at 3372.308 kb on + strand, within Psyr_2788at 3372.308 kb on + strand, within Psyr_2788at 3372.308 kb on + strand, within Psyr_2788at 3372.309 kb on - strand, within Psyr_2788at 3372.467 kb on + strand, within Psyr_2788at 3372.467 kb on + strand, within Psyr_2788at 3372.467 kb on + strand, within Psyr_2788at 3372.467 kb on + strand, within Psyr_2788at 3372.468 kb on - strand, within Psyr_2788at 3372.468 kb on - strandat 3372.593 kb on + strandat 3372.861 kb on - strand, within Psyr_2789at 3372.989 kb on + strand, within Psyr_2789at 3372.990 kb on - strand, within Psyr_2789at 3372.990 kb on - strand, within Psyr_2789at 3373.014 kb on - strand, within Psyr_2789at 3373.053 kb on - strand, within Psyr_2789at 3373.053 kb on - strand, within Psyr_2789

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM
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3,370,676 + Psyr_2785 0.54 -0.9
3,370,677 - Psyr_2785 0.54 +1.2
3,370,677 - Psyr_2785 0.54 -0.8
3,370,876 + Psyr_2785 0.84 +0.0
3,370,877 - Psyr_2785 0.85 +0.5
3,370,877 - Psyr_2785 0.85 +0.1
3,370,997 - +3.2
3,371,199 + Psyr_2786 0.61 +0.7
3,371,199 + Psyr_2786 0.61 -1.2
3,371,200 - Psyr_2786 0.61 +0.7
3,371,200 - Psyr_2786 0.61 +0.6
3,371,200 - Psyr_2786 0.61 -1.3
3,371,276 + Psyr_2786 0.82 +0.9
3,371,277 - Psyr_2786 0.82 -2.4
3,371,301 + Psyr_2786 0.89 -0.3
3,371,301 + Psyr_2786 0.89 +0.7
3,371,301 + Psyr_2786 0.89 +2.2
3,371,302 - Psyr_2786 0.89 +2.2
3,371,332 + -0.1
3,371,346 + +1.2
3,371,346 + +0.6
3,371,346 + -1.2
3,371,346 + -1.0
3,371,347 - -1.0
3,371,347 - +0.5
3,371,347 - -1.3
3,371,397 + +0.5
3,371,397 + -1.6
3,371,398 - +0.2
3,371,413 + -1.0
3,371,413 + +0.8
3,371,414 - +0.5
3,371,425 + -0.3
3,371,425 + +0.7
3,371,425 + -0.8
3,371,448 + -2.1
3,371,448 + +1.8
3,371,448 + -0.1
3,371,448 + +0.5
3,371,451 + -1.2
3,371,452 - +0.9
3,371,531 + -0.2
3,371,531 + +0.1
3,371,531 + +0.6
3,371,531 + -0.7
3,371,532 - +0.7
3,371,532 - -1.3
3,371,532 - +0.2
3,371,637 + -0.9
3,371,638 - +0.8
3,371,640 - -0.1
3,371,644 + +0.7
3,371,644 + +1.2
3,371,644 + +0.8
3,371,644 + +0.2
3,371,644 + -0.8
3,371,644 + -0.0
3,371,644 + +0.0
3,371,644 + -0.5
3,371,644 + -0.3
3,371,644 + -0.9
3,371,644 + +0.2
3,371,645 - +0.3
3,371,645 - +0.2
3,371,645 - +0.1
3,371,645 - +0.1
3,371,645 - -1.1
3,371,645 - -2.2
3,371,645 - +0.6
3,371,645 - +0.3
3,371,645 - -0.5
3,371,645 - +0.1
3,371,645 - -0.6
3,371,645 - +0.4
3,371,645 - +0.2
3,371,645 - +1.2
3,371,675 + -0.6
3,371,675 + +1.2
3,371,675 + +0.6
3,371,676 - +0.8
3,371,676 - +0.2
3,371,676 - +0.1
3,371,712 - -0.5
3,371,789 + Psyr_2787 0.23 -0.6
3,371,850 + Psyr_2787 0.35 -1.9
3,371,901 - Psyr_2787 0.45 -0.0
3,372,102 - Psyr_2787 0.85 -0.1
3,372,128 + -1.0
3,372,128 + +0.9
3,372,129 - -0.8
3,372,179 + +0.9
3,372,179 + +0.2
3,372,179 + +0.2
3,372,180 - -0.3
3,372,180 - +0.3
3,372,180 - -0.1
3,372,180 - +1.2
3,372,180 - -0.0
3,372,253 + Psyr_2788 0.17 -0.8
3,372,253 + Psyr_2788 0.17 +0.9
3,372,308 + Psyr_2788 0.29 -0.0
3,372,308 + Psyr_2788 0.29 +0.9
3,372,308 + Psyr_2788 0.29 -0.6
3,372,309 - Psyr_2788 0.29 +0.1
3,372,467 + Psyr_2788 0.64 +0.7
3,372,467 + Psyr_2788 0.64 +0.2
3,372,467 + Psyr_2788 0.64 +0.9
3,372,467 + Psyr_2788 0.64 +0.2
3,372,468 - Psyr_2788 0.64 -1.3
3,372,468 - +0.2
3,372,593 + -0.3
3,372,861 - Psyr_2789 0.22 -0.9
3,372,989 + Psyr_2789 0.35 -1.6
3,372,990 - Psyr_2789 0.36 +0.5
3,372,990 - Psyr_2789 0.36 +0.2
3,373,014 - Psyr_2789 0.38 -0.8
3,373,053 - Psyr_2789 0.42 -1.0
3,373,053 - Psyr_2789 0.42 +0.4

Or see this region's nucleotide sequence