Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1185

Experiment: KB with Cotarnine Chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1184 and Psyr_1185 are separated by 303 nucleotidesPsyr_1185 and Psyr_1186 overlap by 4 nucleotides Psyr_1184: Psyr_1184 - type III helper protein HrpW1, at 1,338,293 to 1,339,618 _1184 Psyr_1185: Psyr_1185 - type III chaperone protein ShcM, at 1,339,922 to 1,340,416 _1185 Psyr_1186: Psyr_1186 - type III effector HopM1, at 1,340,413 to 1,342,569 _1186 Position (kb) 1339 1340 1341Strain fitness (log2 ratio) -2 -1 0 1 2at 1338.928 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.074 kb on + strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.075 kb on - strand, within Psyr_1184at 1339.078 kb on + strand, within Psyr_1184at 1339.079 kb on - strand, within Psyr_1184at 1339.111 kb on + strand, within Psyr_1184at 1339.111 kb on + strand, within Psyr_1184at 1339.145 kb on - strand, within Psyr_1184at 1339.145 kb on - strand, within Psyr_1184at 1339.181 kb on - strand, within Psyr_1184at 1339.427 kb on - strand, within Psyr_1184at 1339.525 kb on + strandat 1339.525 kb on + strandat 1339.525 kb on + strandat 1339.526 kb on - strandat 1339.526 kb on - strandat 1339.526 kb on - strandat 1339.626 kb on + strandat 1339.627 kb on - strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.645 kb on + strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.646 kb on - strandat 1339.705 kb on + strandat 1339.705 kb on + strandat 1339.705 kb on + strandat 1339.705 kb on + strandat 1339.705 kb on + strandat 1339.706 kb on - strandat 1339.706 kb on - strandat 1339.706 kb on - strandat 1339.706 kb on - strandat 1339.707 kb on + strandat 1339.707 kb on + strandat 1339.707 kb on + strandat 1339.707 kb on + strandat 1339.707 kb on + strandat 1339.707 kb on + strandat 1339.707 kb on + strandat 1339.707 kb on + strandat 1339.708 kb on - strandat 1339.708 kb on - strandat 1339.708 kb on - strandat 1339.708 kb on - strandat 1339.708 kb on - strandat 1339.708 kb on - strandat 1339.869 kb on + strandat 1339.870 kb on - strandat 1339.940 kb on + strandat 1339.940 kb on + strandat 1339.940 kb on + strandat 1339.940 kb on + strandat 1339.941 kb on - strandat 1339.941 kb on - strandat 1339.941 kb on - strandat 1339.951 kb on + strandat 1339.951 kb on + strandat 1339.952 kb on - strandat 1340.049 kb on - strand, within Psyr_1185at 1340.084 kb on + strandat 1340.085 kb on - strand, within Psyr_1185at 1340.158 kb on + strand, within Psyr_1185at 1340.158 kb on + strand, within Psyr_1185at 1340.159 kb on - strand, within Psyr_1185at 1340.159 kb on - strand, within Psyr_1185at 1340.159 kb on - strand, within Psyr_1185at 1340.356 kb on + strand, within Psyr_1185at 1340.357 kb on - strand, within Psyr_1185at 1340.357 kb on - strand, within Psyr_1185at 1340.657 kb on + strand, within Psyr_1186at 1340.657 kb on + strand, within Psyr_1186at 1340.658 kb on - strand, within Psyr_1186at 1340.658 kb on - strand, within Psyr_1186at 1340.658 kb on - strand, within Psyr_1186at 1340.680 kb on - strand, within Psyr_1186at 1340.680 kb on - strand, within Psyr_1186at 1340.805 kb on - strand, within Psyr_1186at 1341.010 kb on + strand, within Psyr_1186at 1341.011 kb on - strand, within Psyr_1186at 1341.345 kb on + strand, within Psyr_1186at 1341.345 kb on + strand, within Psyr_1186at 1341.346 kb on - strand, within Psyr_1186at 1341.346 kb on - strand, within Psyr_1186at 1341.346 kb on - strand, within Psyr_1186at 1341.346 kb on - strand, within Psyr_1186at 1341.346 kb on - strand, within Psyr_1186at 1341.370 kb on + strand, within Psyr_1186at 1341.370 kb on + strand, within Psyr_1186at 1341.370 kb on + strand, within Psyr_1186at 1341.370 kb on + strand, within Psyr_1186at 1341.371 kb on - strand, within Psyr_1186at 1341.371 kb on - strand, within Psyr_1186at 1341.371 kb on - strand, within Psyr_1186at 1341.371 kb on - strand, within Psyr_1186at 1341.372 kb on + strand, within Psyr_1186

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM
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1,338,928 + Psyr_1184 0.48 +1.6
1,339,074 + Psyr_1184 0.59 +1.1
1,339,074 + Psyr_1184 0.59 +1.4
1,339,074 + Psyr_1184 0.59 -0.5
1,339,074 + Psyr_1184 0.59 -0.3
1,339,074 + Psyr_1184 0.59 -1.2
1,339,074 + Psyr_1184 0.59 +1.1
1,339,074 + Psyr_1184 0.59 -0.5
1,339,074 + Psyr_1184 0.59 -0.1
1,339,074 + Psyr_1184 0.59 +0.8
1,339,074 + Psyr_1184 0.59 +0.3
1,339,075 - Psyr_1184 0.59 +1.1
1,339,075 - Psyr_1184 0.59 -1.2
1,339,075 - Psyr_1184 0.59 +0.2
1,339,075 - Psyr_1184 0.59 -1.0
1,339,075 - Psyr_1184 0.59 +0.5
1,339,075 - Psyr_1184 0.59 +0.4
1,339,075 - Psyr_1184 0.59 +0.9
1,339,075 - Psyr_1184 0.59 +0.1
1,339,075 - Psyr_1184 0.59 +0.8
1,339,075 - Psyr_1184 0.59 +0.4
1,339,075 - Psyr_1184 0.59 -0.4
1,339,075 - Psyr_1184 0.59 -0.0
1,339,075 - Psyr_1184 0.59 +0.4
1,339,075 - Psyr_1184 0.59 -0.6
1,339,075 - Psyr_1184 0.59 -0.3
1,339,075 - Psyr_1184 0.59 +0.9
1,339,075 - Psyr_1184 0.59 -0.1
1,339,078 + Psyr_1184 0.59 +0.1
1,339,079 - Psyr_1184 0.59 +1.2
1,339,111 + Psyr_1184 0.62 -0.8
1,339,111 + Psyr_1184 0.62 +0.1
1,339,145 - Psyr_1184 0.64 +0.3
1,339,145 - Psyr_1184 0.64 +0.1
1,339,181 - Psyr_1184 0.67 -0.6
1,339,427 - Psyr_1184 0.86 -1.3
1,339,525 + +1.1
1,339,525 + -0.1
1,339,525 + +0.2
1,339,526 - -0.3
1,339,526 - +0.1
1,339,526 - -0.3
1,339,626 + -0.7
1,339,627 - -0.8
1,339,645 + +1.4
1,339,645 + -0.4
1,339,645 + -0.9
1,339,645 + -0.8
1,339,645 + +1.2
1,339,645 + -0.8
1,339,645 + -1.5
1,339,645 + -0.5
1,339,645 + +0.1
1,339,645 + +0.2
1,339,645 + -0.3
1,339,645 + +0.8
1,339,646 - -0.3
1,339,646 - +1.5
1,339,646 - -0.5
1,339,646 - +1.9
1,339,646 - +0.1
1,339,646 - -1.3
1,339,646 - +1.0
1,339,646 - -1.1
1,339,646 - -0.4
1,339,646 - +2.1
1,339,646 - +0.1
1,339,646 - +0.2
1,339,646 - +0.2
1,339,646 - -0.8
1,339,705 + +0.2
1,339,705 + -0.5
1,339,705 + +0.1
1,339,705 + +0.1
1,339,705 + -0.2
1,339,706 - -0.1
1,339,706 - -0.9
1,339,706 - +0.4
1,339,706 - -0.1
1,339,707 + -0.3
1,339,707 + -0.5
1,339,707 + -1.3
1,339,707 + +0.4
1,339,707 + -0.8
1,339,707 + -1.2
1,339,707 + +0.3
1,339,707 + +0.1
1,339,708 - -1.0
1,339,708 - +0.9
1,339,708 - +0.2
1,339,708 - -0.7
1,339,708 - -1.0
1,339,708 - +0.6
1,339,869 + +0.4
1,339,870 - -0.2
1,339,940 + +1.5
1,339,940 + +0.4
1,339,940 + +1.1
1,339,940 + -0.5
1,339,941 - +0.1
1,339,941 - +0.3
1,339,941 - +0.3
1,339,951 + -0.4
1,339,951 + +0.4
1,339,952 - -0.4
1,340,049 - Psyr_1185 0.26 -0.5
1,340,084 + +1.1
1,340,085 - Psyr_1185 0.33 +0.2
1,340,158 + Psyr_1185 0.48 -0.3
1,340,158 + Psyr_1185 0.48 +1.1
1,340,159 - Psyr_1185 0.48 +1.1
1,340,159 - Psyr_1185 0.48 +2.1
1,340,159 - Psyr_1185 0.48 -0.1
1,340,356 + Psyr_1185 0.88 +0.7
1,340,357 - Psyr_1185 0.88 +0.9
1,340,357 - Psyr_1185 0.88 +1.2
1,340,657 + Psyr_1186 0.11 +0.9
1,340,657 + Psyr_1186 0.11 +0.1
1,340,658 - Psyr_1186 0.11 +1.1
1,340,658 - Psyr_1186 0.11 -0.3
1,340,658 - Psyr_1186 0.11 -0.3
1,340,680 - Psyr_1186 0.12 +0.8
1,340,680 - Psyr_1186 0.12 +0.8
1,340,805 - Psyr_1186 0.18 -1.2
1,341,010 + Psyr_1186 0.28 +0.5
1,341,011 - Psyr_1186 0.28 -0.4
1,341,345 + Psyr_1186 0.43 +0.8
1,341,345 + Psyr_1186 0.43 -0.3
1,341,346 - Psyr_1186 0.43 -0.2
1,341,346 - Psyr_1186 0.43 +1.0
1,341,346 - Psyr_1186 0.43 +1.0
1,341,346 - Psyr_1186 0.43 -0.4
1,341,346 - Psyr_1186 0.43 +0.2
1,341,370 + Psyr_1186 0.44 -0.7
1,341,370 + Psyr_1186 0.44 +0.0
1,341,370 + Psyr_1186 0.44 -0.3
1,341,370 + Psyr_1186 0.44 -0.4
1,341,371 - Psyr_1186 0.44 +0.4
1,341,371 - Psyr_1186 0.44 -1.9
1,341,371 - Psyr_1186 0.44 +0.4
1,341,371 - Psyr_1186 0.44 -0.7
1,341,372 + Psyr_1186 0.44 +0.0

Or see this region's nucleotide sequence