Experiment: KB with Cotarnine Chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0423 and Psyr_0424 overlap by 4 nucleotides Psyr_0424 and Psyr_0425 overlap by 4 nucleotides Psyr_0425 and Psyr_0426 overlap by 4 nucleotides Psyr_0426 and Psyr_0427 overlap by 4 nucleotides
Psyr_0423: Psyr_0423 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 462,773 to 463,501
_0423
Psyr_0424: Psyr_0424 - conserved hypothetical protein, at 463,498 to 463,953
_0424
Psyr_0425: Psyr_0425 - Beta-ketoacyl synthase:Beta-ketoacyl synthase, at 463,950 to 465,146
_0425
Psyr_0426: Psyr_0426 - lipoprotein, putative, at 465,143 to 465,625
_0426
Psyr_0427: Psyr_0427 - conserved hypothetical protein, at 465,622 to 466,356
_0427
Position (kb)
463
464
465
466 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 463.022 kb on - strand, within Psyr_0423 at 463.044 kb on + strand, within Psyr_0423 at 463.044 kb on + strand, within Psyr_0423 at 463.045 kb on - strand, within Psyr_0423 at 463.112 kb on - strand, within Psyr_0423 at 463.153 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.155 kb on + strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.156 kb on - strand, within Psyr_0423 at 463.258 kb on - strand, within Psyr_0423 at 463.260 kb on + strand, within Psyr_0423 at 463.261 kb on - strand, within Psyr_0423 at 463.523 kb on + strand at 463.547 kb on + strand, within Psyr_0424 at 463.548 kb on - strand, within Psyr_0424 at 463.548 kb on - strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.549 kb on + strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 463.550 kb on - strand, within Psyr_0424 at 464.017 kb on + strand at 464.017 kb on + strand at 464.018 kb on - strand at 464.018 kb on - strand at 464.018 kb on - strand at 464.239 kb on - strand, within Psyr_0425 at 464.239 kb on - strand, within Psyr_0425 at 464.305 kb on + strand, within Psyr_0425 at 464.495 kb on + strand, within Psyr_0425 at 464.695 kb on + strand, within Psyr_0425 at 464.695 kb on + strand, within Psyr_0425 at 464.696 kb on - strand, within Psyr_0425 at 465.136 kb on + strand at 465.137 kb on - strand at 465.137 kb on - strand at 465.173 kb on - strand at 465.180 kb on + strand at 465.180 kb on + strand at 465.180 kb on + strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.181 kb on - strand at 465.228 kb on + strand, within Psyr_0426 at 465.614 kb on + strand at 465.758 kb on + strand, within Psyr_0427 at 465.758 kb on + strand, within Psyr_0427 at 465.759 kb on - strand, within Psyr_0427 at 465.759 kb on - strand, within Psyr_0427 at 465.818 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.887 kb on + strand, within Psyr_0427 at 465.888 kb on - strand, within Psyr_0427 at 465.918 kb on - strand, within Psyr_0427 at 465.918 kb on - strand, within Psyr_0427 at 466.066 kb on + strand, within Psyr_0427
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM remove 463,022 - Psyr_0423 0.34 -0.4 463,044 + Psyr_0423 0.37 -0.7 463,044 + Psyr_0423 0.37 -0.5 463,045 - Psyr_0423 0.37 -0.8 463,112 - Psyr_0423 0.47 -0.3 463,153 + Psyr_0423 0.52 +0.4 463,155 + Psyr_0423 0.52 +0.7 463,155 + Psyr_0423 0.52 -0.7 463,155 + Psyr_0423 0.52 +0.9 463,155 + Psyr_0423 0.52 -1.0 463,155 + Psyr_0423 0.52 -1.3 463,155 + Psyr_0423 0.52 -1.6 463,156 - Psyr_0423 0.53 -0.6 463,156 - Psyr_0423 0.53 +0.4 463,156 - Psyr_0423 0.53 -0.4 463,156 - Psyr_0423 0.53 +2.4 463,156 - Psyr_0423 0.53 +0.7 463,156 - Psyr_0423 0.53 -0.6 463,156 - Psyr_0423 0.53 -0.1 463,156 - Psyr_0423 0.53 -0.7 463,156 - Psyr_0423 0.53 -0.1 463,258 - Psyr_0423 0.67 -0.1 463,260 + Psyr_0423 0.67 +1.3 463,261 - Psyr_0423 0.67 -0.2 463,523 + -0.3 463,547 + Psyr_0424 0.11 -2.2 463,548 - Psyr_0424 0.11 -0.6 463,548 - Psyr_0424 0.11 +1.2 463,549 + Psyr_0424 0.11 +3.3 463,549 + Psyr_0424 0.11 +0.3 463,549 + Psyr_0424 0.11 +0.3 463,549 + Psyr_0424 0.11 +0.6 463,549 + Psyr_0424 0.11 -1.2 463,549 + Psyr_0424 0.11 +0.1 463,549 + Psyr_0424 0.11 +0.2 463,549 + Psyr_0424 0.11 -0.3 463,549 + Psyr_0424 0.11 -1.5 463,549 + Psyr_0424 0.11 -0.4 463,549 + Psyr_0424 0.11 -0.0 463,549 + Psyr_0424 0.11 +0.5 463,549 + Psyr_0424 0.11 -0.6 463,549 + Psyr_0424 0.11 +0.4 463,549 + Psyr_0424 0.11 -0.9 463,549 + Psyr_0424 0.11 -0.7 463,549 + Psyr_0424 0.11 -0.2 463,549 + Psyr_0424 0.11 -0.7 463,549 + Psyr_0424 0.11 -0.4 463,549 + Psyr_0424 0.11 -0.9 463,549 + Psyr_0424 0.11 -0.3 463,549 + Psyr_0424 0.11 +1.3 463,550 - Psyr_0424 0.11 +0.8 463,550 - Psyr_0424 0.11 -1.1 463,550 - Psyr_0424 0.11 -1.0 463,550 - Psyr_0424 0.11 +1.5 463,550 - Psyr_0424 0.11 -0.7 463,550 - Psyr_0424 0.11 -1.2 463,550 - Psyr_0424 0.11 +0.1 463,550 - Psyr_0424 0.11 +0.4 463,550 - Psyr_0424 0.11 -1.0 463,550 - Psyr_0424 0.11 -0.1 463,550 - Psyr_0424 0.11 -1.0 463,550 - Psyr_0424 0.11 -0.2 463,550 - Psyr_0424 0.11 -0.8 463,550 - Psyr_0424 0.11 +0.6 463,550 - Psyr_0424 0.11 +0.5 463,550 - Psyr_0424 0.11 +0.3 463,550 - Psyr_0424 0.11 +0.1 463,550 - Psyr_0424 0.11 +0.4 464,017 + -0.4 464,017 + +0.4 464,018 - -0.4 464,018 - +0.7 464,018 - +0.6 464,239 - Psyr_0425 0.24 +1.7 464,239 - Psyr_0425 0.24 +1.1 464,305 + Psyr_0425 0.30 +0.6 464,495 + Psyr_0425 0.46 -0.5 464,695 + Psyr_0425 0.62 +0.3 464,695 + Psyr_0425 0.62 +0.9 464,696 - Psyr_0425 0.62 +1.1 465,136 + +1.3 465,137 - -0.0 465,137 - -1.0 465,173 - +0.3 465,180 + +0.4 465,180 + -0.8 465,180 + -0.6 465,181 - +0.4 465,181 - -0.6 465,181 - -0.6 465,181 - +0.3 465,181 - -0.1 465,228 + Psyr_0426 0.18 +0.2 465,614 + +0.1 465,758 + Psyr_0427 0.19 -0.0 465,758 + Psyr_0427 0.19 -0.6 465,759 - Psyr_0427 0.19 +0.3 465,759 - Psyr_0427 0.19 -0.2 465,818 + Psyr_0427 0.27 +0.1 465,887 + Psyr_0427 0.36 -1.0 465,887 + Psyr_0427 0.36 +0.5 465,887 + Psyr_0427 0.36 +0.8 465,887 + Psyr_0427 0.36 +0.1 465,887 + Psyr_0427 0.36 -0.3 465,887 + Psyr_0427 0.36 +0.1 465,887 + Psyr_0427 0.36 +0.3 465,887 + Psyr_0427 0.36 +1.0 465,887 + Psyr_0427 0.36 +0.4 465,887 + Psyr_0427 0.36 -0.5 465,887 + Psyr_0427 0.36 -1.0 465,888 - Psyr_0427 0.36 +0.1 465,918 - Psyr_0427 0.40 +2.5 465,918 - Psyr_0427 0.40 +0.6 466,066 + Psyr_0427 0.60 +0.5
Or see this region's nucleotide sequence