Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31315

Experiment: Sucrose (C) and Glycine betaine (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose (C) and Glycine betaine (N); with MOPS
4,582,801	+		PFLU_RS20260	0.63	+1.3
4,582,801	+		PFLU_RS20260	0.63	+1.2
4,582,801	+		PFLU_RS20260	0.63	-1.3
4,582,802	-		PFLU_RS20260	0.63	+0.4
4,582,802	-		PFLU_RS20260	0.63	+0.4
4,582,802	-		PFLU_RS20260	0.63	-1.6
4,582,897	-		PFLU_RS20260	0.83	-0.8
4,582,908	-		PFLU_RS20260	0.85	-1.6
4,582,908	-		PFLU_RS20260	0.85	+0.2
4,582,922	-		PFLU_RS20260	0.88	+1.1
4,582,922	-		PFLU_RS20260	0.88	+0.0
4,583,034	+				+0.6
4,583,034	+				+0.4
4,583,034	+				-1.0
4,583,035	-				+0.9
4,583,035	-				-1.5
4,583,060	+				+0.6
4,583,129	-				+1.2
4,583,177	+				+1.1
4,583,177	+				-2.0
4,583,177	+				-0.5
4,583,177	+				-0.7
4,583,177	+				-0.3
4,583,178	-				+0.1
4,583,178	-				+0.3
4,583,178	-				+1.1
4,583,178	-				+1.2
4,583,178	-				+0.5
4,583,178	-				-0.8
4,583,178	-				-0.7
4,583,178	-				-0.2
4,583,178	-				+0.5
4,583,261	+		PFLU_RS30980	0.29	+0.3
4,583,329	+		PFLU_RS30980	0.49	-0.4
4,583,329	+		PFLU_RS30980	0.49	-0.5
4,583,330	-		PFLU_RS30980	0.49	-1.7
4,583,330	-		PFLU_RS30980	0.49	-0.0
4,583,330	-		PFLU_RS30980	0.49	-0.2
4,583,383	+		PFLU_RS30980	0.65	-0.7
4,583,383	+		PFLU_RS30980	0.65	+0.4
4,583,383	+		PFLU_RS30980	0.65	+0.8
4,583,383	+		PFLU_RS30980	0.65	-0.7
4,583,383	+		PFLU_RS30980	0.65	-0.6
4,583,383	+		PFLU_RS30980	0.65	-0.9
4,583,383	+		PFLU_RS30980	0.65	-0.5
4,583,383	+		PFLU_RS30980	0.65	-0.0
4,583,383	+		PFLU_RS30980	0.65	+0.5
4,583,383	+		PFLU_RS30980	0.65	+0.5
4,583,383	+		PFLU_RS30980	0.65	+0.3
4,583,383	+		PFLU_RS30980	0.65	-0.1
4,583,383	+		PFLU_RS30980	0.65	+0.4
4,583,383	+		PFLU_RS30980	0.65	+0.8
4,583,384	-		PFLU_RS30980	0.65	+0.8
4,583,384	-		PFLU_RS30980	0.65	+1.4
4,583,384	-		PFLU_RS30980	0.65	-0.2
4,583,384	-		PFLU_RS30980	0.65	-0.5
4,583,384	-		PFLU_RS30980	0.65	-0.4
4,583,384	-		PFLU_RS30980	0.65	-0.0
4,583,384	-		PFLU_RS30980	0.65	-0.8
4,583,384	-		PFLU_RS30980	0.65	-0.3
4,583,384	-		PFLU_RS30980	0.65	-0.6
4,583,384	-		PFLU_RS30980	0.65	-1.3
4,583,384	-		PFLU_RS30980	0.65	-1.2
4,583,384	-		PFLU_RS30980	0.65	-0.8
4,583,384	-		PFLU_RS30980	0.65	+0.6
4,583,384	-		PFLU_RS30980	0.65	-1.1
4,583,389	+		PFLU_RS30980	0.67	+0.5
4,583,389	+		PFLU_RS30980	0.67	+1.2
4,583,390	-		PFLU_RS30980	0.67	-0.4
4,583,444	+		PFLU_RS30980	0.83	-0.7
4,583,444	+		PFLU_RS30980	0.83	+1.6
4,583,444	+		PFLU_RS30980	0.83	-0.4
4,583,444	+		PFLU_RS30980	0.83	-1.0
4,583,444	+		PFLU_RS30980	0.83	-0.0
4,583,444	+		PFLU_RS30980	0.83	+0.2
4,583,444	+		PFLU_RS30980	0.83	-0.4
4,583,444	+		PFLU_RS30980	0.83	+0.5
4,583,444	+		PFLU_RS30980	0.83	-0.2
4,583,444	+		PFLU_RS30980	0.83	-0.5
4,583,444	+		PFLU_RS30980	0.83	+0.1
4,583,444	+		PFLU_RS30980	0.83	+0.3
4,583,444	+		PFLU_RS30980	0.83	+0.8
4,583,444	+		PFLU_RS30980	0.83	-0.3
4,583,444	+		PFLU_RS30980	0.83	+0.0
4,583,444	+		PFLU_RS30980	0.83	-1.4
4,583,444	+		PFLU_RS30980	0.83	-0.5
4,583,444	+		PFLU_RS30980	0.83	+0.3
4,583,444	+		PFLU_RS30980	0.83	+0.2
4,583,444	+		PFLU_RS30980	0.83	-0.3
4,583,445	-		PFLU_RS30980	0.83	+0.4
4,583,445	-		PFLU_RS30980	0.83	-0.7
4,583,445	-		PFLU_RS30980	0.83	+1.3
4,583,445	-		PFLU_RS30980	0.83	-1.2
4,583,445	-		PFLU_RS30980	0.83	+0.8
4,583,445	-		PFLU_RS30980	0.83	-0.5
4,583,445	-		PFLU_RS30980	0.83	-0.0
4,583,445	-		PFLU_RS30980	0.83	+0.9
4,583,445	-		PFLU_RS30980	0.83	-0.0
4,583,445	-		PFLU_RS30980	0.83	-1.9
4,583,445	-		PFLU_RS30980	0.83	+0.1
4,583,445	-		PFLU_RS30980	0.83	+0.3
4,583,445	-		PFLU_RS30980	0.83	+1.0
4,583,445	-		PFLU_RS30980	0.83	+0.1
4,583,445	-		PFLU_RS30980	0.83	+2.1
4,583,448	+		PFLU_RS30980	0.84	+0.4
4,583,448	+		PFLU_RS30980	0.84	+0.8
4,583,448	+		PFLU_RS30980	0.84	-0.4
4,583,448	+		PFLU_RS30980	0.84	+0.6
4,583,448	+		PFLU_RS30980	0.84	+0.3
4,583,448	+		PFLU_RS30980	0.84	-0.3
4,583,449	-		PFLU_RS30980	0.84	-0.6
4,583,449	-		PFLU_RS30980	0.84	-0.2
4,583,449	-		PFLU_RS30980	0.84	+0.2
4,583,449	-		PFLU_RS30980	0.84	-0.6
4,583,449	-		PFLU_RS30980	0.84	-1.4
4,583,449	-		PFLU_RS30980	0.84	+1.3
4,583,486	+				+0.4
4,583,486	+				-0.4
4,583,486	+				+0.2
4,583,486	+				-0.4
4,583,486	+				-0.5
4,583,486	+				-0.3
4,583,487	-				+1.4
4,583,487	-				+0.3
4,583,487	-				+1.7
4,583,489	+				+0.6
4,583,489	+				-1.0
4,583,489	+				+0.0
4,583,489	+				+0.4
4,583,489	+				-0.4
4,583,489	+				+0.4
4,583,489	+				+0.5
4,583,489	+				-0.3
4,583,489	+				+1.2
4,583,489	+				+0.7
4,583,489	+				-0.5
4,583,489	+				+0.4
4,583,490	-				+1.1
4,583,490	-				-0.2
4,583,490	-				-1.3
4,583,490	-				+1.1
4,583,490	-				-0.0
4,583,490	-				+0.7
4,583,513	+				+0.3
4,583,513	+				-0.9
4,583,513	+				+1.4
4,583,513	+				+0.2
4,583,513	+				+0.4
4,583,513	+				+0.4
4,583,513	+				+1.1
4,583,513	+				-0.3
4,583,514	-				-1.0
4,583,514	-				-0.7
4,583,514	-				-1.8
4,583,514	-				+0.5
4,583,514	-				-0.3
4,583,514	-				-0.2
4,583,514	-				+0.9
4,583,514	-				+0.2
4,583,533	+		PFLU_RS31315	0.14	+0.8
4,583,533	+		PFLU_RS31315	0.14	+0.4
4,583,533	+		PFLU_RS31315	0.14	+1.4
4,583,534	-		PFLU_RS31315	0.15	+1.0
4,583,545	+		PFLU_RS31315	0.22	-2.4
4,583,545	+		PFLU_RS31315	0.22	-0.0
4,583,545	+		PFLU_RS31315	0.22	-0.0
4,583,639	-		PFLU_RS31315	0.86	+0.2
4,583,639	-		PFLU_RS31315	0.86	-1.8
4,583,639	-		PFLU_RS31315	0.86	-0.6
4,583,639	-		PFLU_RS31315	0.86	+0.5
4,583,698	+		PFLU_RS30985	0.15	-0.5
4,583,699	-		PFLU_RS30985	0.16	-0.1
4,583,699	-		PFLU_RS30985	0.16	-0.2
4,583,850	+		PFLU_RS30985	0.77	-1.5
4,583,907	+				-0.3
4,583,950	+		PFLU_RS20275	0.20	+0.7
4,583,950	+		PFLU_RS20275	0.20	-0.2
4,583,950	+		PFLU_RS20275	0.20	-0.4
4,583,951	-		PFLU_RS20275	0.20	+0.3
4,583,971	+		PFLU_RS20275	0.30	-0.2
4,583,971	+		PFLU_RS20275	0.30	+0.1
4,583,971	+		PFLU_RS20275	0.30	+0.5
4,583,971	+		PFLU_RS20275	0.30	-0.8
4,583,971	+		PFLU_RS20275	0.30	+0.1
4,583,971	+		PFLU_RS20275	0.30	+0.8
4,583,971	+		PFLU_RS20275	0.30	+0.6
4,583,971	+		PFLU_RS20275	0.30	-0.1
4,583,971	+		PFLU_RS20275	0.30	+0.4
4,583,971	+		PFLU_RS20275	0.30	+0.4
4,583,971	+		PFLU_RS20275	0.30	-0.6
4,583,971	+		PFLU_RS20275	0.30	-0.7
4,583,971	+		PFLU_RS20275	0.30	-2.6
4,583,971	+		PFLU_RS20275	0.30	-1.0
4,583,971	+		PFLU_RS20275	0.30	-0.7
4,583,971	+		PFLU_RS20275	0.30	+0.0
4,583,971	+		PFLU_RS20275	0.30	+0.4
4,583,971	+		PFLU_RS20275	0.30	-0.4
4,583,972	-		PFLU_RS20275	0.30	+0.2
4,583,972	-		PFLU_RS20275	0.30	-1.1
4,583,972	-		PFLU_RS20275	0.30	+0.4
4,583,972	-		PFLU_RS20275	0.30	-0.2
4,583,972	-		PFLU_RS20275	0.30	+1.1
4,583,972	-		PFLU_RS20275	0.30	-0.1
4,583,972	-		PFLU_RS20275	0.30	+0.1
4,583,972	-		PFLU_RS20275	0.30	-0.5
4,583,972	-		PFLU_RS20275	0.30	-1.0
4,583,972	-		PFLU_RS20275	0.30	-0.1
4,583,972	-		PFLU_RS20275	0.30	+0.4
4,583,972	-		PFLU_RS20275	0.30	-1.1
4,583,972	-		PFLU_RS20275	0.30	+0.4
4,583,972	-		PFLU_RS20275	0.30	+0.5
4,583,972	-		PFLU_RS20275	0.30	+0.8
4,583,973	+		PFLU_RS20275	0.31	+1.0
4,583,973	+		PFLU_RS20275	0.31	+1.0
4,583,973	+		PFLU_RS20275	0.31	+1.4
4,583,973	+		PFLU_RS20275	0.31	-0.6
4,583,973	+		PFLU_RS20275	0.31	+0.9
4,583,973	+		PFLU_RS20275	0.31	+0.4
4,583,973	+		PFLU_RS20275	0.31	-0.1
4,583,973	+		PFLU_RS20275	0.31	+1.0
4,583,973	+		PFLU_RS20275	0.31	+0.4
4,583,973	+		PFLU_RS20275	0.31	+0.5
4,583,973	+		PFLU_RS20275	0.31	-0.2
4,583,973	+		PFLU_RS20275	0.31	-0.8
4,583,973	+		PFLU_RS20275	0.31	-1.4
4,583,974	-		PFLU_RS20275	0.31	+1.8
4,583,974	-		PFLU_RS20275	0.31	+0.3
4,583,974	-		PFLU_RS20275	0.31	-0.7
4,583,974	-		PFLU_RS20275	0.31	+1.1
4,583,974	-		PFLU_RS20275	0.31	+0.9
4,583,974	-		PFLU_RS20275	0.31	+0.1
4,583,974	-		PFLU_RS20275	0.31	+1.4
4,583,974	-		PFLU_RS20275	0.31	-1.9
4,583,974	-		PFLU_RS20275	0.31	-2.0
4,583,974	-		PFLU_RS20275	0.31	+0.4
4,583,974	-		PFLU_RS20275	0.31	-0.7
4,583,974	-		PFLU_RS20275	0.31	-0.3
4,583,974	-		PFLU_RS20275	0.31	-1.3
4,584,040	-		PFLU_RS20275	0.64	+0.8
4,584,040	-		PFLU_RS20275	0.64	+0.6
4,584,088	+		PFLU_RS20275	0.87	+1.1
4,584,088	+		PFLU_RS20275	0.87	+1.0
4,584,088	+		PFLU_RS20275	0.87	+0.9
4,584,088	+		PFLU_RS20275	0.87	+0.0
4,584,089	-		PFLU_RS20275	0.88	-2.8
4,584,089	-		PFLU_RS20275	0.88	+0.8
4,584,092	+		PFLU_RS20275	0.89	+0.3
4,584,092	+		PFLU_RS20275	0.89	+0.3
4,584,092	+		PFLU_RS20275	0.89	+0.2
4,584,092	+		PFLU_RS20275	0.89	+0.4
4,584,092	+		PFLU_RS20275	0.89	-2.2
4,584,092	+		PFLU_RS20275	0.89	+0.9
4,584,092	+		PFLU_RS20275	0.89	-1.1
4,584,092	+		PFLU_RS20275	0.89	+0.8
4,584,093	-				-0.8
4,584,093	-				+0.3
4,584,093	-				+0.7
4,584,093	-				+0.1
4,584,111	+				+0.8
4,584,163	+				-0.8
4,584,176	+				-1.7
4,584,177	-				+0.3
4,584,250	+		PFLU_RS20280	0.61	-2.5
4,584,250	+		PFLU_RS20280	0.61	-0.2
4,584,282	+				-2.1
4,584,283	-				+0.9
4,584,292	-				+0.3
4,584,434	+		PFLU_RS20285	0.18	-1.2
4,584,434	+		PFLU_RS20285	0.18	+0.1
4,584,434	+		PFLU_RS20285	0.18	-0.3
4,584,434	+		PFLU_RS20285	0.18	-0.2
4,584,434	+		PFLU_RS20285	0.18	+0.5
4,584,434	+		PFLU_RS20285	0.18	-0.5
4,584,435	-		PFLU_RS20285	0.18	+1.2
4,584,435	-		PFLU_RS20285	0.18	-1.3
4,584,435	-		PFLU_RS20285	0.18	+0.3
4,584,435	-		PFLU_RS20285	0.18	+0.1
4,584,435	-		PFLU_RS20285	0.18	+1.2
4,584,435	-		PFLU_RS20285	0.18	-0.6
4,584,509	+		PFLU_RS20285	0.39	+0.2
4,584,509	+		PFLU_RS20285	0.39	+0.4
4,584,557	+		PFLU_RS20285	0.52	+0.5
4,584,558	-		PFLU_RS20285	0.53	+1.5
4,584,558	-		PFLU_RS20285	0.53	+0.0
4,584,560	+		PFLU_RS20285	0.53	-0.2
4,584,560	+		PFLU_RS20285	0.53	-2.0
4,584,560	+		PFLU_RS20285	0.53	-0.4
4,584,561	-		PFLU_RS20285	0.54	+0.6
4,584,561	-		PFLU_RS20285	0.54	-0.4
4,584,561	-		PFLU_RS20285	0.54	+0.0