Experiment: Sucrose (C) and Glycine betaine (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24965 and PFLU_RS24970 overlap by 38 nucleotides PFLU_RS24970 and PFLU_RS24975 overlap by 4 nucleotides PFLU_RS24975 and PFLU_RS24980 are separated by 9 nucleotides
PFLU_RS24965: PFLU_RS24965 - chemotaxis response regulator protein-glutamate methylesterase, at 5,590,906 to 5,591,982
_RS24965
PFLU_RS24970: PFLU_RS24970 - chemoreceptor glutamine deamidase CheD, at 5,591,945 to 5,592,478
_RS24970
PFLU_RS24975: PFLU_RS24975 - SAM-dependent methyltransferase, at 5,592,475 to 5,593,284
_RS24975
PFLU_RS24980: PFLU_RS24980 - purine-binding chemotaxis protein CheW, at 5,593,294 to 5,593,833
_RS24980
Position (kb) 5591
5592
5593 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.140 kb on + strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.141 kb on - strand, within PFLU_RS24965 at 5591.188 kb on - strand, within PFLU_RS24965 at 5591.201 kb on + strand, within PFLU_RS24965 at 5591.201 kb on + strand, within PFLU_RS24965 at 5591.201 kb on + strand, within PFLU_RS24965 at 5591.202 kb on - strand, within PFLU_RS24965 at 5591.202 kb on - strand, within PFLU_RS24965 at 5591.204 kb on + strand, within PFLU_RS24965 at 5591.204 kb on + strand, within PFLU_RS24965 at 5591.204 kb on + strand, within PFLU_RS24965 at 5591.204 kb on + strand, within PFLU_RS24965 at 5591.205 kb on - strand, within PFLU_RS24965 at 5591.205 kb on - strand, within PFLU_RS24965 at 5591.205 kb on - strand, within PFLU_RS24965 at 5591.205 kb on - strand, within PFLU_RS24965 at 5591.271 kb on + strand, within PFLU_RS24965 at 5591.271 kb on + strand, within PFLU_RS24965 at 5591.371 kb on - strand, within PFLU_RS24965 at 5591.376 kb on + strand, within PFLU_RS24965 at 5591.376 kb on + strand, within PFLU_RS24965 at 5591.376 kb on + strand, within PFLU_RS24965 at 5591.376 kb on + strand, within PFLU_RS24965 at 5591.377 kb on - strand, within PFLU_RS24965 at 5591.377 kb on - strand, within PFLU_RS24965 at 5591.377 kb on - strand, within PFLU_RS24965 at 5591.377 kb on - strand, within PFLU_RS24965 at 5591.901 kb on + strand at 5591.902 kb on - strand at 5591.923 kb on + strand at 5591.923 kb on + strand at 5591.923 kb on + strand at 5591.923 kb on + strand at 5591.924 kb on - strand at 5591.924 kb on - strand at 5591.924 kb on - strand at 5591.924 kb on - strand at 5591.924 kb on - strand at 5591.976 kb on + strand at 5591.977 kb on - strand at 5591.993 kb on + strand at 5591.993 kb on + strand at 5591.993 kb on + strand at 5591.993 kb on + strand at 5591.993 kb on + strand at 5591.993 kb on + strand at 5591.993 kb on + strand at 5591.993 kb on + strand at 5591.994 kb on - strand at 5591.994 kb on - strand at 5591.994 kb on - strand at 5591.994 kb on - strand at 5591.994 kb on - strand at 5591.994 kb on - strand at 5591.994 kb on - strand at 5592.100 kb on - strand, within PFLU_RS24970 at 5592.131 kb on - strand, within PFLU_RS24970 at 5592.279 kb on + strand, within PFLU_RS24970 at 5592.280 kb on - strand, within PFLU_RS24970 at 5592.280 kb on - strand, within PFLU_RS24970 at 5592.397 kb on + strand, within PFLU_RS24970 at 5592.397 kb on + strand, within PFLU_RS24970 at 5592.398 kb on - strand, within PFLU_RS24970 at 5592.398 kb on - strand, within PFLU_RS24970 at 5592.398 kb on - strand, within PFLU_RS24970 at 5592.398 kb on - strand, within PFLU_RS24970 at 5592.446 kb on + strand at 5592.446 kb on + strand at 5592.446 kb on + strand at 5592.488 kb on + strand at 5592.560 kb on + strand, within PFLU_RS24975 at 5592.560 kb on + strand, within PFLU_RS24975 at 5592.560 kb on + strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.561 kb on - strand, within PFLU_RS24975 at 5592.626 kb on + strand, within PFLU_RS24975 at 5592.627 kb on - strand, within PFLU_RS24975 at 5592.627 kb on - strand, within PFLU_RS24975 at 5592.627 kb on - strand, within PFLU_RS24975 at 5592.627 kb on - strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.776 kb on + strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.777 kb on - strand, within PFLU_RS24975 at 5592.824 kb on + strand, within PFLU_RS24975 at 5592.824 kb on + strand, within PFLU_RS24975 at 5592.824 kb on + strand, within PFLU_RS24975 at 5592.824 kb on + strand, within PFLU_RS24975 at 5592.825 kb on - strand, within PFLU_RS24975 at 5592.930 kb on - strand, within PFLU_RS24975 at 5592.930 kb on - strand, within PFLU_RS24975 at 5592.930 kb on - strand, within PFLU_RS24975 at 5593.047 kb on - strand, within PFLU_RS24975 at 5593.124 kb on + strand, within PFLU_RS24975 at 5593.124 kb on + strand, within PFLU_RS24975 at 5593.124 kb on + strand, within PFLU_RS24975 at 5593.125 kb on - strand, within PFLU_RS24975 at 5593.125 kb on - strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.133 kb on + strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.134 kb on - strand, within PFLU_RS24975 at 5593.148 kb on + strand, within PFLU_RS24975 at 5593.148 kb on + strand, within PFLU_RS24975 at 5593.148 kb on + strand, within PFLU_RS24975 at 5593.149 kb on - strand, within PFLU_RS24975 at 5593.149 kb on - strand, within PFLU_RS24975
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with MOPS remove 5,591,140 + PFLU_RS24965 0.22 +0.0 5,591,140 + PFLU_RS24965 0.22 +0.2 5,591,140 + PFLU_RS24965 0.22 -0.1 5,591,140 + PFLU_RS24965 0.22 -0.3 5,591,140 + PFLU_RS24965 0.22 +0.7 5,591,140 + PFLU_RS24965 0.22 +1.2 5,591,140 + PFLU_RS24965 0.22 +0.2 5,591,140 + PFLU_RS24965 0.22 -0.9 5,591,140 + PFLU_RS24965 0.22 +0.2 5,591,140 + PFLU_RS24965 0.22 -0.0 5,591,140 + PFLU_RS24965 0.22 +1.5 5,591,140 + PFLU_RS24965 0.22 +0.4 5,591,141 - PFLU_RS24965 0.22 +0.3 5,591,141 - PFLU_RS24965 0.22 +0.1 5,591,141 - PFLU_RS24965 0.22 -0.3 5,591,141 - PFLU_RS24965 0.22 +1.0 5,591,141 - PFLU_RS24965 0.22 +0.1 5,591,141 - PFLU_RS24965 0.22 -0.0 5,591,141 - PFLU_RS24965 0.22 -1.3 5,591,141 - PFLU_RS24965 0.22 -1.8 5,591,141 - PFLU_RS24965 0.22 -2.1 5,591,141 - PFLU_RS24965 0.22 +0.6 5,591,141 - PFLU_RS24965 0.22 -0.2 5,591,188 - PFLU_RS24965 0.26 +0.1 5,591,201 + PFLU_RS24965 0.27 +0.4 5,591,201 + PFLU_RS24965 0.27 -0.3 5,591,201 + PFLU_RS24965 0.27 +1.4 5,591,202 - PFLU_RS24965 0.27 -1.6 5,591,202 - PFLU_RS24965 0.27 +0.2 5,591,204 + PFLU_RS24965 0.28 -0.0 5,591,204 + PFLU_RS24965 0.28 -0.4 5,591,204 + PFLU_RS24965 0.28 -0.4 5,591,204 + PFLU_RS24965 0.28 +0.2 5,591,205 - PFLU_RS24965 0.28 -0.1 5,591,205 - PFLU_RS24965 0.28 +1.4 5,591,205 - PFLU_RS24965 0.28 -1.8 5,591,205 - PFLU_RS24965 0.28 +0.8 5,591,271 + PFLU_RS24965 0.34 +0.6 5,591,271 + PFLU_RS24965 0.34 +0.3 5,591,371 - PFLU_RS24965 0.43 +0.2 5,591,376 + PFLU_RS24965 0.44 -0.6 5,591,376 + PFLU_RS24965 0.44 -0.2 5,591,376 + PFLU_RS24965 0.44 +0.7 5,591,376 + PFLU_RS24965 0.44 +0.5 5,591,377 - PFLU_RS24965 0.44 +0.2 5,591,377 - PFLU_RS24965 0.44 +0.7 5,591,377 - PFLU_RS24965 0.44 -1.0 5,591,377 - PFLU_RS24965 0.44 -0.1 5,591,901 + +0.2 5,591,902 - -0.1 5,591,923 + +0.0 5,591,923 + +0.4 5,591,923 + +0.1 5,591,923 + -0.2 5,591,924 - +0.4 5,591,924 - +2.2 5,591,924 - -0.4 5,591,924 - -0.9 5,591,924 - -0.1 5,591,976 + +0.8 5,591,977 - -0.2 5,591,993 + +0.4 5,591,993 + -1.0 5,591,993 + -0.8 5,591,993 + +0.3 5,591,993 + -0.3 5,591,993 + +0.1 5,591,993 + +0.5 5,591,993 + +1.4 5,591,994 - +0.7 5,591,994 - -0.4 5,591,994 - +0.6 5,591,994 - -0.7 5,591,994 - +0.5 5,591,994 - -0.3 5,591,994 - -0.1 5,592,100 - PFLU_RS24970 0.29 +0.7 5,592,131 - PFLU_RS24970 0.35 +0.5 5,592,279 + PFLU_RS24970 0.63 +0.1 5,592,280 - PFLU_RS24970 0.63 -0.5 5,592,280 - PFLU_RS24970 0.63 -0.2 5,592,397 + PFLU_RS24970 0.85 +0.8 5,592,397 + PFLU_RS24970 0.85 +0.4 5,592,398 - PFLU_RS24970 0.85 -0.3 5,592,398 - PFLU_RS24970 0.85 +0.5 5,592,398 - PFLU_RS24970 0.85 +0.2 5,592,398 - PFLU_RS24970 0.85 +1.1 5,592,446 + +0.2 5,592,446 + +0.1 5,592,446 + -1.1 5,592,488 + +0.9 5,592,560 + PFLU_RS24975 0.10 +0.7 5,592,560 + PFLU_RS24975 0.10 +2.0 5,592,560 + PFLU_RS24975 0.10 +0.5 5,592,561 - PFLU_RS24975 0.11 -1.9 5,592,561 - PFLU_RS24975 0.11 -0.1 5,592,561 - PFLU_RS24975 0.11 +1.1 5,592,561 - PFLU_RS24975 0.11 +0.3 5,592,561 - PFLU_RS24975 0.11 +0.4 5,592,561 - PFLU_RS24975 0.11 -0.7 5,592,626 + PFLU_RS24975 0.19 -0.4 5,592,627 - PFLU_RS24975 0.19 +0.4 5,592,627 - PFLU_RS24975 0.19 +0.4 5,592,627 - PFLU_RS24975 0.19 -1.2 5,592,627 - PFLU_RS24975 0.19 -0.8 5,592,776 + PFLU_RS24975 0.37 -0.2 5,592,776 + PFLU_RS24975 0.37 +0.7 5,592,776 + PFLU_RS24975 0.37 -0.2 5,592,776 + PFLU_RS24975 0.37 -0.4 5,592,776 + PFLU_RS24975 0.37 -1.6 5,592,777 - PFLU_RS24975 0.37 +1.3 5,592,777 - PFLU_RS24975 0.37 +0.8 5,592,777 - PFLU_RS24975 0.37 -0.9 5,592,777 - PFLU_RS24975 0.37 +0.3 5,592,777 - PFLU_RS24975 0.37 +1.3 5,592,777 - PFLU_RS24975 0.37 -0.2 5,592,777 - PFLU_RS24975 0.37 -0.5 5,592,824 + PFLU_RS24975 0.43 +0.4 5,592,824 + PFLU_RS24975 0.43 -0.4 5,592,824 + PFLU_RS24975 0.43 +1.1 5,592,824 + PFLU_RS24975 0.43 +0.6 5,592,825 - PFLU_RS24975 0.43 -0.4 5,592,930 - PFLU_RS24975 0.56 -0.7 5,592,930 - PFLU_RS24975 0.56 +0.8 5,592,930 - PFLU_RS24975 0.56 +1.5 5,593,047 - PFLU_RS24975 0.71 +0.5 5,593,124 + PFLU_RS24975 0.80 +0.1 5,593,124 + PFLU_RS24975 0.80 +0.1 5,593,124 + PFLU_RS24975 0.80 -0.6 5,593,125 - PFLU_RS24975 0.80 +0.6 5,593,125 - PFLU_RS24975 0.80 -0.5 5,593,133 + PFLU_RS24975 0.81 +1.1 5,593,133 + PFLU_RS24975 0.81 -0.2 5,593,133 + PFLU_RS24975 0.81 +0.3 5,593,133 + PFLU_RS24975 0.81 -1.4 5,593,133 + PFLU_RS24975 0.81 -0.2 5,593,133 + PFLU_RS24975 0.81 +0.5 5,593,133 + PFLU_RS24975 0.81 +0.1 5,593,133 + PFLU_RS24975 0.81 -0.5 5,593,133 + PFLU_RS24975 0.81 +0.1 5,593,133 + PFLU_RS24975 0.81 +0.1 5,593,133 + PFLU_RS24975 0.81 +0.2 5,593,133 + PFLU_RS24975 0.81 -0.4 5,593,133 + PFLU_RS24975 0.81 +0.8 5,593,133 + PFLU_RS24975 0.81 -1.9 5,593,133 + PFLU_RS24975 0.81 +0.3 5,593,133 + PFLU_RS24975 0.81 -0.2 5,593,133 + PFLU_RS24975 0.81 -0.5 5,593,133 + PFLU_RS24975 0.81 +0.4 5,593,133 + PFLU_RS24975 0.81 +0.0 5,593,133 + PFLU_RS24975 0.81 +0.3 5,593,133 + PFLU_RS24975 0.81 +0.1 5,593,133 + PFLU_RS24975 0.81 +0.3 5,593,133 + PFLU_RS24975 0.81 -1.3 5,593,133 + PFLU_RS24975 0.81 -0.6 5,593,133 + PFLU_RS24975 0.81 +0.2 5,593,133 + PFLU_RS24975 0.81 -2.2 5,593,133 + PFLU_RS24975 0.81 -0.7 5,593,133 + PFLU_RS24975 0.81 +0.6 5,593,133 + PFLU_RS24975 0.81 +0.7 5,593,133 + PFLU_RS24975 0.81 -2.0 5,593,134 - PFLU_RS24975 0.81 +0.2 5,593,134 - PFLU_RS24975 0.81 +0.3 5,593,134 - PFLU_RS24975 0.81 -1.5 5,593,134 - PFLU_RS24975 0.81 -1.5 5,593,134 - PFLU_RS24975 0.81 +1.3 5,593,134 - PFLU_RS24975 0.81 +0.3 5,593,134 - PFLU_RS24975 0.81 -0.2 5,593,134 - PFLU_RS24975 0.81 +0.6 5,593,134 - PFLU_RS24975 0.81 +0.7 5,593,134 - PFLU_RS24975 0.81 -2.6 5,593,134 - PFLU_RS24975 0.81 +0.5 5,593,134 - PFLU_RS24975 0.81 +1.0 5,593,134 - PFLU_RS24975 0.81 -0.3 5,593,134 - PFLU_RS24975 0.81 +0.2 5,593,134 - PFLU_RS24975 0.81 +0.3 5,593,134 - PFLU_RS24975 0.81 -0.4 5,593,148 + PFLU_RS24975 0.83 -0.6 5,593,148 + PFLU_RS24975 0.83 -0.8 5,593,148 + PFLU_RS24975 0.83 +0.2 5,593,149 - PFLU_RS24975 0.83 +0.7 5,593,149 - PFLU_RS24975 0.83 +0.2
Or see this region's nucleotide sequence