Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19225

Experiment: Sucrose (C) and Glycine betaine (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS19220 and PFLU_RS19225 overlap by 11 nucleotidesPFLU_RS19225 and PFLU_RS19230 overlap by 17 nucleotides PFLU_RS19220: PFLU_RS19220 - efflux RND transporter permease subunit, at 4,343,169 to 4,346,390 _RS19220 PFLU_RS19225: PFLU_RS19225 - efflux RND transporter periplasmic adaptor subunit, at 4,346,380 to 4,347,549 _RS19225 PFLU_RS19230: PFLU_RS19230 - efflux transporter outer membrane subunit, at 4,347,533 to 4,348,951 _RS19230 Position (kb) 4346 4347 4348Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4345.439 kb on + strand, within PFLU_RS19220at 4345.440 kb on - strand, within PFLU_RS19220at 4345.440 kb on - strand, within PFLU_RS19220at 4345.560 kb on + strand, within PFLU_RS19220at 4345.560 kb on + strand, within PFLU_RS19220at 4345.710 kb on + strand, within PFLU_RS19220at 4345.710 kb on + strand, within PFLU_RS19220at 4345.711 kb on - strand, within PFLU_RS19220at 4345.711 kb on - strand, within PFLU_RS19220at 4345.917 kb on + strand, within PFLU_RS19220at 4345.917 kb on + strand, within PFLU_RS19220at 4345.918 kb on - strand, within PFLU_RS19220at 4345.918 kb on - strand, within PFLU_RS19220at 4345.918 kb on - strand, within PFLU_RS19220at 4345.918 kb on - strand, within PFLU_RS19220at 4345.918 kb on - strand, within PFLU_RS19220at 4345.971 kb on - strand, within PFLU_RS19220at 4346.166 kb on + strandat 4346.351 kb on + strandat 4346.352 kb on - strandat 4346.352 kb on - strandat 4346.641 kb on + strand, within PFLU_RS19225at 4346.642 kb on - strand, within PFLU_RS19225at 4346.642 kb on - strand, within PFLU_RS19225at 4346.642 kb on - strand, within PFLU_RS19225at 4346.908 kb on + strand, within PFLU_RS19225at 4346.935 kb on + strand, within PFLU_RS19225at 4346.935 kb on + strand, within PFLU_RS19225at 4346.936 kb on - strand, within PFLU_RS19225at 4346.936 kb on - strand, within PFLU_RS19225at 4346.936 kb on - strand, within PFLU_RS19225at 4346.936 kb on - strand, within PFLU_RS19225at 4346.936 kb on - strand, within PFLU_RS19225at 4347.067 kb on + strand, within PFLU_RS19225at 4347.067 kb on + strand, within PFLU_RS19225at 4347.067 kb on + strand, within PFLU_RS19225at 4347.067 kb on + strand, within PFLU_RS19225at 4347.067 kb on + strand, within PFLU_RS19225at 4347.067 kb on + strand, within PFLU_RS19225at 4347.067 kb on + strand, within PFLU_RS19225at 4347.067 kb on + strand, within PFLU_RS19225at 4347.068 kb on - strand, within PFLU_RS19225at 4347.068 kb on - strand, within PFLU_RS19225at 4347.068 kb on - strand, within PFLU_RS19225at 4347.088 kb on + strand, within PFLU_RS19225at 4347.089 kb on - strand, within PFLU_RS19225at 4347.547 kb on + strandat 4347.547 kb on + strandat 4347.605 kb on + strandat 4347.605 kb on + strandat 4347.606 kb on - strandat 4347.716 kb on + strand, within PFLU_RS19230at 4347.717 kb on - strand, within PFLU_RS19230at 4347.812 kb on + strand, within PFLU_RS19230at 4347.926 kb on + strand, within PFLU_RS19230at 4347.926 kb on + strand, within PFLU_RS19230at 4347.926 kb on + strand, within PFLU_RS19230at 4347.926 kb on + strand, within PFLU_RS19230at 4347.927 kb on - strand, within PFLU_RS19230at 4347.927 kb on - strand, within PFLU_RS19230at 4347.938 kb on - strand, within PFLU_RS19230at 4347.959 kb on + strand, within PFLU_RS19230at 4347.959 kb on + strand, within PFLU_RS19230at 4347.959 kb on + strand, within PFLU_RS19230at 4347.959 kb on + strand, within PFLU_RS19230at 4347.959 kb on + strand, within PFLU_RS19230at 4347.960 kb on - strand, within PFLU_RS19230at 4347.960 kb on - strand, within PFLU_RS19230at 4347.960 kb on - strand, within PFLU_RS19230at 4347.960 kb on - strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.082 kb on + strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.083 kb on - strand, within PFLU_RS19230at 4348.175 kb on + strand, within PFLU_RS19230at 4348.176 kb on - strand, within PFLU_RS19230at 4348.291 kb on - strand, within PFLU_RS19230at 4348.291 kb on - strand, within PFLU_RS19230at 4348.291 kb on - strand, within PFLU_RS19230

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with MOPS
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4,345,439 + PFLU_RS19220 0.70 -0.5
4,345,440 - PFLU_RS19220 0.70 +0.5
4,345,440 - PFLU_RS19220 0.70 +0.9
4,345,560 + PFLU_RS19220 0.74 -0.4
4,345,560 + PFLU_RS19220 0.74 +2.7
4,345,710 + PFLU_RS19220 0.79 +0.1
4,345,710 + PFLU_RS19220 0.79 +0.4
4,345,711 - PFLU_RS19220 0.79 +1.4
4,345,711 - PFLU_RS19220 0.79 +2.0
4,345,917 + PFLU_RS19220 0.85 -0.4
4,345,917 + PFLU_RS19220 0.85 +0.6
4,345,918 - PFLU_RS19220 0.85 -0.1
4,345,918 - PFLU_RS19220 0.85 -0.4
4,345,918 - PFLU_RS19220 0.85 -0.1
4,345,918 - PFLU_RS19220 0.85 +0.5
4,345,918 - PFLU_RS19220 0.85 -1.5
4,345,971 - PFLU_RS19220 0.87 -0.2
4,346,166 + -0.2
4,346,351 + -0.8
4,346,352 - +1.4
4,346,352 - -0.3
4,346,641 + PFLU_RS19225 0.22 -0.1
4,346,642 - PFLU_RS19225 0.22 +1.1
4,346,642 - PFLU_RS19225 0.22 +0.3
4,346,642 - PFLU_RS19225 0.22 +0.6
4,346,908 + PFLU_RS19225 0.45 -0.0
4,346,935 + PFLU_RS19225 0.47 -0.2
4,346,935 + PFLU_RS19225 0.47 +0.3
4,346,936 - PFLU_RS19225 0.48 -1.1
4,346,936 - PFLU_RS19225 0.48 +1.5
4,346,936 - PFLU_RS19225 0.48 -0.5
4,346,936 - PFLU_RS19225 0.48 +0.7
4,346,936 - PFLU_RS19225 0.48 +1.7
4,347,067 + PFLU_RS19225 0.59 +0.1
4,347,067 + PFLU_RS19225 0.59 -0.3
4,347,067 + PFLU_RS19225 0.59 +0.4
4,347,067 + PFLU_RS19225 0.59 +0.2
4,347,067 + PFLU_RS19225 0.59 +0.1
4,347,067 + PFLU_RS19225 0.59 +0.9
4,347,067 + PFLU_RS19225 0.59 +0.0
4,347,067 + PFLU_RS19225 0.59 +0.5
4,347,068 - PFLU_RS19225 0.59 -1.4
4,347,068 - PFLU_RS19225 0.59 +0.4
4,347,068 - PFLU_RS19225 0.59 +1.2
4,347,088 + PFLU_RS19225 0.61 +0.7
4,347,089 - PFLU_RS19225 0.61 +0.3
4,347,547 + -0.9
4,347,547 + -2.5
4,347,605 + +0.4
4,347,605 + +0.3
4,347,606 - -1.8
4,347,716 + PFLU_RS19230 0.13 -0.1
4,347,717 - PFLU_RS19230 0.13 -0.1
4,347,812 + PFLU_RS19230 0.20 +0.5
4,347,926 + PFLU_RS19230 0.28 +0.3
4,347,926 + PFLU_RS19230 0.28 +0.2
4,347,926 + PFLU_RS19230 0.28 +0.3
4,347,926 + PFLU_RS19230 0.28 +1.7
4,347,927 - PFLU_RS19230 0.28 +0.6
4,347,927 - PFLU_RS19230 0.28 +0.4
4,347,938 - PFLU_RS19230 0.29 +0.4
4,347,959 + PFLU_RS19230 0.30 -0.2
4,347,959 + PFLU_RS19230 0.30 -0.9
4,347,959 + PFLU_RS19230 0.30 -0.2
4,347,959 + PFLU_RS19230 0.30 +0.3
4,347,959 + PFLU_RS19230 0.30 +0.5
4,347,960 - PFLU_RS19230 0.30 -1.4
4,347,960 - PFLU_RS19230 0.30 +0.5
4,347,960 - PFLU_RS19230 0.30 +0.3
4,347,960 - PFLU_RS19230 0.30 -0.9
4,348,082 + PFLU_RS19230 0.39 +0.8
4,348,082 + PFLU_RS19230 0.39 -0.5
4,348,082 + PFLU_RS19230 0.39 +0.2
4,348,082 + PFLU_RS19230 0.39 +3.3
4,348,082 + PFLU_RS19230 0.39 +0.6
4,348,082 + PFLU_RS19230 0.39 -0.5
4,348,082 + PFLU_RS19230 0.39 -0.5
4,348,082 + PFLU_RS19230 0.39 +0.2
4,348,082 + PFLU_RS19230 0.39 +1.2
4,348,082 + PFLU_RS19230 0.39 -0.0
4,348,082 + PFLU_RS19230 0.39 -1.2
4,348,082 + PFLU_RS19230 0.39 +0.4
4,348,082 + PFLU_RS19230 0.39 -1.2
4,348,082 + PFLU_RS19230 0.39 -0.9
4,348,082 + PFLU_RS19230 0.39 +0.5
4,348,083 - PFLU_RS19230 0.39 -0.1
4,348,083 - PFLU_RS19230 0.39 +0.8
4,348,083 - PFLU_RS19230 0.39 -0.4
4,348,083 - PFLU_RS19230 0.39 -0.5
4,348,083 - PFLU_RS19230 0.39 -0.5
4,348,083 - PFLU_RS19230 0.39 -0.3
4,348,083 - PFLU_RS19230 0.39 +0.2
4,348,083 - PFLU_RS19230 0.39 +0.3
4,348,083 - PFLU_RS19230 0.39 +0.4
4,348,083 - PFLU_RS19230 0.39 -0.2
4,348,083 - PFLU_RS19230 0.39 +0.5
4,348,083 - PFLU_RS19230 0.39 -0.8
4,348,083 - PFLU_RS19230 0.39 -0.4
4,348,083 - PFLU_RS19230 0.39 -0.1
4,348,083 - PFLU_RS19230 0.39 +0.3
4,348,083 - PFLU_RS19230 0.39 -0.7
4,348,175 + PFLU_RS19230 0.45 +0.6
4,348,176 - PFLU_RS19230 0.45 +0.3
4,348,291 - PFLU_RS19230 0.53 -0.0
4,348,291 - PFLU_RS19230 0.53 -1.8
4,348,291 - PFLU_RS19230 0.53 +0.7

Or see this region's nucleotide sequence