Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15430

Experiment: Sucrose (C) and Glycine betaine (N); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose (C) and Glycine betaine (N); with MOPS
3,459,368	+		PFLU_RS31290	0.11	+1.5
3,459,438	+		PFLU_RS31290	0.56	+0.4
3,459,439	-		PFLU_RS31290	0.57	+0.9
3,459,451	-		PFLU_RS31290	0.65	+0.6
3,459,503	+				+0.7
3,459,503	+				-0.7
3,459,503	+				+2.2
3,459,503	+				+0.1
3,459,503	+				-0.6
3,459,504	-				+1.1
3,459,504	-				-0.4
3,459,508	-		PFLU_RS15420	0.19	-0.6
3,459,508	-		PFLU_RS15420	0.19	+0.1
3,459,600	+		PFLU_RS15420	0.64	+0.2
3,459,601	-		PFLU_RS15420	0.64	-0.1
3,459,601	-		PFLU_RS15420	0.64	+1.2
3,459,601	-		PFLU_RS15420	0.64	+0.1
3,459,601	-		PFLU_RS15420	0.64	-0.1
3,459,754	+				+1.1
3,459,755	-				-1.1
3,459,755	-				+0.0
3,459,755	-				+0.6
3,459,850	+		PFLU_RS15425	0.22	-0.5
3,459,900	+		PFLU_RS15425	0.41	+1.5
3,459,901	-		PFLU_RS15425	0.41	-0.2
3,459,901	-		PFLU_RS15425	0.41	-1.7
3,459,901	-		PFLU_RS15425	0.41	+0.4
3,459,950	+		PFLU_RS15425	0.60	-0.0
3,459,950	+		PFLU_RS15425	0.60	-0.8
3,459,950	+		PFLU_RS15425	0.60	+0.7
3,459,950	+		PFLU_RS15425	0.60	-0.8
3,459,950	+		PFLU_RS15425	0.60	+0.3
3,459,950	+		PFLU_RS15425	0.60	+0.3
3,459,950	+		PFLU_RS15425	0.60	-0.2
3,459,950	+		PFLU_RS15425	0.60	-0.9
3,459,950	+		PFLU_RS15425	0.60	-1.2
3,459,951	-		PFLU_RS15425	0.60	-0.0
3,459,951	-		PFLU_RS15425	0.60	-0.7
3,459,951	-		PFLU_RS15425	0.60	+0.3
3,459,951	-		PFLU_RS15425	0.60	+0.1
3,459,951	-		PFLU_RS15425	0.60	+0.1
3,459,951	-		PFLU_RS15425	0.60	-0.0
3,459,951	-		PFLU_RS15425	0.60	-1.0
3,459,951	-		PFLU_RS15425	0.60	+0.2
3,459,951	-		PFLU_RS15425	0.60	-0.8
3,459,951	-		PFLU_RS15425	0.60	-0.8
3,459,951	-		PFLU_RS15425	0.60	+0.3
3,459,954	+		PFLU_RS15425	0.61	-0.3
3,459,954	+		PFLU_RS15425	0.61	+0.7
3,459,954	+		PFLU_RS15425	0.61	+0.4
3,459,954	+		PFLU_RS15425	0.61	-1.5
3,459,954	+		PFLU_RS15425	0.61	+0.5
3,459,954	+		PFLU_RS15425	0.61	+0.1
3,459,954	+		PFLU_RS15425	0.61	+0.8
3,459,954	+		PFLU_RS15425	0.61	+0.3
3,459,954	+		PFLU_RS15425	0.61	-1.1
3,459,954	+		PFLU_RS15425	0.61	+0.7
3,459,954	+		PFLU_RS15425	0.61	-0.8
3,459,954	+		PFLU_RS15425	0.61	+0.1
3,459,954	+		PFLU_RS15425	0.61	-0.8
3,459,954	+		PFLU_RS15425	0.61	-0.8
3,459,954	+		PFLU_RS15425	0.61	+0.7
3,459,954	+		PFLU_RS15425	0.61	-0.5
3,459,954	+		PFLU_RS15425	0.61	-0.3
3,459,954	+		PFLU_RS15425	0.61	+0.2
3,459,954	+		PFLU_RS15425	0.61	+0.8
3,459,954	+		PFLU_RS15425	0.61	+0.3
3,459,954	+		PFLU_RS15425	0.61	-0.8
3,459,954	+		PFLU_RS15425	0.61	+0.1
3,459,954	+		PFLU_RS15425	0.61	-0.1
3,459,954	+		PFLU_RS15425	0.61	-0.6
3,459,954	+		PFLU_RS15425	0.61	-1.2
3,459,954	+		PFLU_RS15425	0.61	+0.1
3,459,954	+		PFLU_RS15425	0.61	-1.2
3,459,954	+		PFLU_RS15425	0.61	-1.5
3,459,954	+		PFLU_RS15425	0.61	+1.0
3,459,954	+		PFLU_RS15425	0.61	-2.5
3,459,954	+		PFLU_RS15425	0.61	-2.7
3,459,955	-		PFLU_RS15425	0.61	+0.0
3,459,955	-		PFLU_RS15425	0.61	-0.5
3,459,955	-		PFLU_RS15425	0.61	-0.6
3,459,955	-		PFLU_RS15425	0.61	+0.5
3,459,955	-		PFLU_RS15425	0.61	+1.0
3,459,955	-		PFLU_RS15425	0.61	+0.9
3,459,955	-		PFLU_RS15425	0.61	-0.0
3,459,955	-		PFLU_RS15425	0.61	-0.0
3,459,955	-		PFLU_RS15425	0.61	+0.8
3,459,955	-		PFLU_RS15425	0.61	+0.5
3,459,955	-		PFLU_RS15425	0.61	-0.4
3,459,955	-		PFLU_RS15425	0.61	+0.3
3,459,955	-		PFLU_RS15425	0.61	-1.3
3,459,955	-		PFLU_RS15425	0.61	+0.0
3,459,955	-		PFLU_RS15425	0.61	+0.4
3,459,955	-		PFLU_RS15425	0.61	+0.7
3,459,955	-		PFLU_RS15425	0.61	+1.8
3,459,955	-		PFLU_RS15425	0.61	+0.0
3,459,955	-		PFLU_RS15425	0.61	+1.0
3,459,965	+		PFLU_RS15425	0.65	-0.7
3,459,978	+		PFLU_RS15425	0.70	+0.0
3,460,010	-		PFLU_RS15425	0.82	-0.9
3,460,010	-		PFLU_RS15425	0.82	+0.1
3,460,021	+		PFLU_RS15425	0.86	-0.1
3,460,021	+		PFLU_RS15425	0.86	+0.7
3,460,021	+		PFLU_RS15425	0.86	-0.9
3,460,022	-		PFLU_RS15425	0.87	+0.2
3,460,022	-		PFLU_RS15425	0.87	+0.3
3,460,022	-		PFLU_RS15425	0.87	-0.9
3,460,022	-		PFLU_RS15425	0.87	-0.4
3,460,022	-		PFLU_RS15425	0.87	-0.3
3,460,022	-		PFLU_RS15425	0.87	-0.1
3,460,044	+				-1.4
3,460,044	+				+0.2
3,460,044	+				+0.2
3,460,044	+				-0.1
3,460,044	+				-1.1
3,460,044	+				+0.4
3,460,045	-				+0.5
3,460,045	-				-0.5
3,460,045	-				-0.3
3,460,045	-				+0.7
3,460,045	-				-0.2
3,460,045	-				+0.5
3,460,045	-				-0.5
3,460,086	-				-0.6
3,460,099	+				-0.1
3,460,099	+				-1.7
3,460,099	+				-2.2
3,460,099	+				+0.9
3,460,099	+				-0.2
3,460,099	+				-1.8
3,460,099	+				-0.2
3,460,100	-				-0.3
3,460,100	-				+0.1
3,460,100	-				-0.4
3,460,100	-				+0.1
3,460,109	+				+0.7
3,460,109	+				+0.4
3,460,138	+				-0.8
3,460,138	+				+0.8
3,460,139	-				+0.3
3,460,147	-				+0.2
3,460,208	+				-0.1
3,460,208	+				+1.2
3,460,313	+				+0.6
3,460,313	+				-1.2
3,460,313	+				+0.8
3,460,313	+				+0.5
3,460,313	+				-0.5
3,460,313	+				+0.2
3,460,313	+				+0.5
3,460,313	+				-0.5
3,460,313	+				-1.1
3,460,313	+				+0.2
3,460,313	+				-0.6
3,460,313	+				-0.4
3,460,314	-				-0.6
3,460,314	-				-0.4
3,460,314	-				-1.0
3,460,314	-				+0.0
3,460,314	-				-1.3
3,460,314	-				+0.8
3,460,314	-				+0.0
3,460,314	-				+0.6
3,460,314	-				-1.3
3,460,324	-				-0.0
3,460,350	+				-0.1
3,460,350	+				+0.2
3,460,362	+				+0.4
3,460,362	+				-1.0
3,460,363	-				-0.8
3,460,402	+				+0.6
3,460,403	-				+0.9
3,460,437	-		PFLU_RS15430	0.12	+2.2
3,460,437	-		PFLU_RS15430	0.12	+0.6
3,460,447	-		PFLU_RS15430	0.14	+0.1
3,460,730	+		PFLU_RS15430	0.58	+0.9
3,460,731	-		PFLU_RS15430	0.58	+0.1
3,460,731	-		PFLU_RS15430	0.58	-0.1
3,460,731	-		PFLU_RS15430	0.58	-1.6
3,460,731	-		PFLU_RS15430	0.58	+0.4
3,460,731	-		PFLU_RS15430	0.58	+0.6
3,460,811	+		PFLU_RS15430	0.71	+0.2
3,460,817	+		PFLU_RS15430	0.72	+0.8
3,460,817	+		PFLU_RS15430	0.72	+1.2
3,460,817	+		PFLU_RS15430	0.72	+0.5
3,460,817	+		PFLU_RS15430	0.72	+1.1
3,460,817	+		PFLU_RS15430	0.72	+0.3
3,460,817	+		PFLU_RS15430	0.72	-0.1
3,460,818	-		PFLU_RS15430	0.72	+0.1
3,460,818	-		PFLU_RS15430	0.72	-0.1
3,460,818	-		PFLU_RS15430	0.72	+0.3
3,460,818	-		PFLU_RS15430	0.72	-0.2
3,460,818	-		PFLU_RS15430	0.72	+0.3
3,460,818	-		PFLU_RS15430	0.72	-0.5
3,460,818	-		PFLU_RS15430	0.72	+0.0
3,460,818	-		PFLU_RS15430	0.72	+0.3
3,460,851	+		PFLU_RS15430	0.77	+1.1
3,460,851	+		PFLU_RS15430	0.77	+0.4
3,460,852	-		PFLU_RS15430	0.77	+0.2
3,460,852	-		PFLU_RS15430	0.77	+0.9
3,460,946	+				-1.3
3,460,946	+				+1.9
3,460,946	+				+0.2
3,460,946	+				+0.1
3,460,947	-				-1.7
3,460,994	+				-1.9
3,460,994	+				+0.7
3,460,994	+				-1.8
3,460,995	-				-0.0
3,461,001	+				-0.5
3,461,001	+				-0.6
3,461,002	-				+0.8
3,461,002	-				-1.6
3,461,002	-				-0.7
3,461,002	-				-0.9
3,461,002	-				-0.0
3,461,022	+				-0.1
3,461,022	+				-0.8
3,461,022	+				-1.6
3,461,022	+				+0.1
3,461,022	+				+0.7
3,461,022	+				+0.2
3,461,022	+				+0.0
3,461,022	+				+1.1
3,461,022	+				-0.3
3,461,022	+				+0.1
3,461,022	+				+0.5
3,461,023	-				-0.5
3,461,023	-				+0.6
3,461,023	-				+0.5
3,461,023	-				-0.3
3,461,023	-				-0.4
3,461,023	-				+1.0
3,461,034	+				+0.8
3,461,034	+				+0.4
3,461,034	+				+0.7
3,461,034	+				+0.9
3,461,034	+				-0.0
3,461,034	+				-0.1
3,461,034	+				-2.3
3,461,035	-				+1.0
3,461,035	-				-0.1
3,461,035	-				-1.4
3,461,035	-				+0.4
3,461,035	-				+0.8
3,461,035	-				+0.4
3,461,064	+		PFLU_RS15435	0.15	+0.2
3,461,064	+		PFLU_RS15435	0.15	-0.1
3,461,065	-		PFLU_RS15435	0.15	+0.1
3,461,140	+		PFLU_RS15435	0.35	+0.1
3,461,140	+		PFLU_RS15435	0.35	+1.2
3,461,141	-		PFLU_RS15435	0.35	-0.9
3,461,141	-		PFLU_RS15435	0.35	-1.5
3,461,141	-		PFLU_RS15435	0.35	+0.1
3,461,141	-		PFLU_RS15435	0.35	-0.6
3,461,141	-		PFLU_RS15435	0.35	-1.3
3,461,141	-		PFLU_RS15435	0.35	+0.1
3,461,141	-		PFLU_RS15435	0.35	+0.6
3,461,250	-		PFLU_RS15435	0.63	+0.1
3,461,255	-		PFLU_RS15435	0.65	+1.2
3,461,276	+		PFLU_RS15435	0.70	+0.9
3,461,277	-		PFLU_RS15435	0.70	+1.2
3,461,283	-		PFLU_RS15435	0.72	-1.5
3,461,367	+				-1.6
3,461,367	+				+0.4
3,461,367	+				-0.5
3,461,368	-				-0.3
3,461,368	-				-0.8
3,461,368	-				+0.2
3,461,368	-				-0.3
3,461,368	-				+0.9
3,461,388	+				-1.8
3,461,469	+				+0.8
3,461,469	+				+0.3
3,461,483	+				+0.6
3,461,483	+				+1.1
3,461,484	-				-0.1
3,461,513	+		PFLU_RS15440	0.17	+0.8
3,461,513	+		PFLU_RS15440	0.17	+0.8
3,461,513	+		PFLU_RS15440	0.17	+1.2
3,461,582	+		PFLU_RS15440	0.35	+0.2
3,461,582	+		PFLU_RS15440	0.35	-0.1
3,461,582	+		PFLU_RS15440	0.35	+0.4
3,461,583	-		PFLU_RS15440	0.35	-2.3
3,461,583	-		PFLU_RS15440	0.35	+0.6
3,461,644	+		PFLU_RS15440	0.51	+0.3
3,461,645	-		PFLU_RS15440	0.51	+0.2
3,461,753	+		PFLU_RS15440	0.79	-1.0
3,461,753	+		PFLU_RS15440	0.79	+0.7
3,461,753	+		PFLU_RS15440	0.79	+0.8
3,461,754	-		PFLU_RS15440	0.79	-0.9
3,461,763	-		PFLU_RS15440	0.82	-0.6
3,461,806	+				-1.1
3,461,806	+				+0.5
3,461,807	-				+1.5
3,461,813	+				-1.2
3,461,851	+				-0.3
3,461,851	+				+0.0
3,461,851	+				+0.1
3,461,851	+				+0.6
3,461,851	+				+0.5
3,461,851	+				+0.1
3,461,851	+				+0.7
3,461,851	+				-0.2
3,461,852	-				+0.7
3,461,852	-				+0.5
3,461,852	-				+0.1
3,461,852	-				-0.4
3,461,852	-				-0.3
3,461,852	-				+0.0
3,461,852	-				+0.8
3,461,852	-				+0.5
3,461,852	-				+0.9
3,461,852	-				-0.3
3,461,864	+				+0.9
3,461,865	-				-0.5
3,461,865	-				+1.2
3,461,865	-				+0.6
3,461,872	+				-1.3
3,461,872	+				-0.2
3,461,873	-				-0.4
3,461,873	-				+0.5
3,461,873	-				+0.1
3,461,873	-				+0.1
3,461,893	+				-0.3
3,461,893	+				-0.3
3,461,893	+				+0.8
3,461,907	-				+0.4
3,461,936	+		PFLU_RS15445	0.13	+0.1
3,461,936	+		PFLU_RS15445	0.13	-0.3
3,461,936	+		PFLU_RS15445	0.13	-0.2
3,461,936	+		PFLU_RS15445	0.13	-0.2
3,461,936	+		PFLU_RS15445	0.13	-0.8
3,461,936	+		PFLU_RS15445	0.13	+0.8
3,461,936	+		PFLU_RS15445	0.13	-1.5
3,461,937	-		PFLU_RS15445	0.13	+0.1
3,461,937	-		PFLU_RS15445	0.13	+0.0
3,461,937	-		PFLU_RS15445	0.13	-0.6
3,461,937	-		PFLU_RS15445	0.13	+0.2
3,461,937	-		PFLU_RS15445	0.13	-0.9
3,461,937	-		PFLU_RS15445	0.13	-0.2
3,461,937	-		PFLU_RS15445	0.13	+0.4
3,461,937	-		PFLU_RS15445	0.13	-1.5
3,461,937	-		PFLU_RS15445	0.13	-0.4
3,461,937	-		PFLU_RS15445	0.13	+0.0
3,461,937	-		PFLU_RS15445	0.13	-1.0
3,461,937	-		PFLU_RS15445	0.13	-0.8