Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08600

Experiment: Sucrose (C) and Glycine betaine (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08595 and PFLU_RS08600 are separated by 156 nucleotidesPFLU_RS08600 and PFLU_RS08605 are separated by 75 nucleotidesPFLU_RS08605 and PFLU_RS08610 are separated by 71 nucleotides PFLU_RS08595: PFLU_RS08595 - sodium:proton antiporter, at 1,915,891 to 1,917,621 _RS08595 PFLU_RS08600: PFLU_RS08600 - glutaredoxin family protein, at 1,917,778 to 1,918,014 _RS08600 PFLU_RS08605: PFLU_RS08605 - hypothetical protein, at 1,918,090 to 1,918,425 _RS08605 PFLU_RS08610: PFLU_RS08610 - pseudouridine synthase, at 1,918,497 to 1,919,387 _RS08610 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -2 -1 0 1 2at 1917.039 kb on + strand, within PFLU_RS08595at 1917.039 kb on + strand, within PFLU_RS08595at 1917.039 kb on + strand, within PFLU_RS08595at 1917.040 kb on - strand, within PFLU_RS08595at 1917.040 kb on - strand, within PFLU_RS08595at 1917.101 kb on + strand, within PFLU_RS08595at 1917.102 kb on - strand, within PFLU_RS08595at 1917.102 kb on - strand, within PFLU_RS08595at 1917.304 kb on + strand, within PFLU_RS08595at 1917.304 kb on + strand, within PFLU_RS08595at 1917.534 kb on - strandat 1917.534 kb on - strandat 1917.534 kb on - strandat 1917.677 kb on + strandat 1917.677 kb on + strandat 1917.677 kb on + strandat 1917.677 kb on + strandat 1917.677 kb on + strandat 1917.677 kb on + strandat 1917.678 kb on - strandat 1917.678 kb on - strandat 1917.678 kb on - strandat 1917.678 kb on - strandat 1917.678 kb on - strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.679 kb on + strandat 1917.680 kb on + strandat 1917.680 kb on - strandat 1917.680 kb on - strandat 1917.680 kb on - strandat 1917.680 kb on - strandat 1917.680 kb on - strandat 1917.740 kb on + strandat 1917.741 kb on - strandat 1917.741 kb on - strandat 1917.741 kb on - strandat 1917.741 kb on - strandat 1917.753 kb on + strandat 1917.753 kb on + strandat 1917.753 kb on + strandat 1917.753 kb on + strandat 1917.754 kb on - strandat 1917.754 kb on - strandat 1917.754 kb on - strandat 1917.754 kb on - strandat 1917.754 kb on - strandat 1917.919 kb on + strand, within PFLU_RS08600at 1917.919 kb on + strand, within PFLU_RS08600at 1917.919 kb on + strand, within PFLU_RS08600at 1917.919 kb on + strand, within PFLU_RS08600at 1917.920 kb on - strand, within PFLU_RS08600at 1917.920 kb on - strand, within PFLU_RS08600at 1917.920 kb on - strand, within PFLU_RS08600at 1917.920 kb on - strand, within PFLU_RS08600at 1917.920 kb on - strand, within PFLU_RS08600at 1918.037 kb on + strandat 1918.037 kb on + strandat 1918.037 kb on + strandat 1918.037 kb on + strandat 1918.037 kb on + strandat 1918.037 kb on + strandat 1918.037 kb on + strandat 1918.038 kb on - strandat 1918.038 kb on - strandat 1918.041 kb on + strandat 1918.041 kb on + strandat 1918.054 kb on + strandat 1918.076 kb on + strandat 1918.224 kb on + strand, within PFLU_RS08605at 1918.224 kb on + strand, within PFLU_RS08605at 1918.224 kb on + strand, within PFLU_RS08605at 1918.224 kb on + strand, within PFLU_RS08605at 1918.225 kb on - strand, within PFLU_RS08605at 1918.294 kb on + strand, within PFLU_RS08605at 1918.307 kb on + strand, within PFLU_RS08605at 1918.307 kb on + strand, within PFLU_RS08605at 1918.308 kb on - strand, within PFLU_RS08605at 1918.308 kb on - strand, within PFLU_RS08605at 1918.308 kb on - strand, within PFLU_RS08605at 1918.308 kb on - strand, within PFLU_RS08605at 1918.309 kb on + strand, within PFLU_RS08605at 1918.309 kb on + strand, within PFLU_RS08605at 1918.309 kb on + strand, within PFLU_RS08605at 1918.309 kb on + strand, within PFLU_RS08605at 1918.309 kb on + strand, within PFLU_RS08605at 1918.309 kb on + strand, within PFLU_RS08605at 1918.310 kb on - strand, within PFLU_RS08605at 1918.310 kb on - strand, within PFLU_RS08605at 1918.310 kb on - strand, within PFLU_RS08605at 1918.310 kb on - strand, within PFLU_RS08605at 1918.310 kb on - strand, within PFLU_RS08605at 1918.318 kb on + strand, within PFLU_RS08605at 1918.318 kb on + strand, within PFLU_RS08605at 1918.319 kb on - strand, within PFLU_RS08605at 1918.319 kb on - strand, within PFLU_RS08605at 1918.435 kb on + strandat 1918.435 kb on + strandat 1918.436 kb on - strandat 1918.436 kb on - strandat 1918.545 kb on + strandat 1918.545 kb on + strandat 1918.545 kb on + strandat 1918.545 kb on + strandat 1918.545 kb on + strandat 1918.545 kb on + strandat 1918.545 kb on + strandat 1918.546 kb on - strandat 1918.546 kb on - strandat 1918.546 kb on - strandat 1918.546 kb on - strandat 1918.546 kb on - strandat 1918.546 kb on - strandat 1918.689 kb on + strand, within PFLU_RS08610at 1918.689 kb on + strand, within PFLU_RS08610at 1918.690 kb on - strand, within PFLU_RS08610at 1918.690 kb on - strand, within PFLU_RS08610at 1918.690 kb on - strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.710 kb on + strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.711 kb on - strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.713 kb on + strand, within PFLU_RS08610at 1918.714 kb on - strand, within PFLU_RS08610at 1918.714 kb on - strand, within PFLU_RS08610at 1918.714 kb on - strand, within PFLU_RS08610at 1918.767 kb on + strand, within PFLU_RS08610at 1918.767 kb on + strand, within PFLU_RS08610at 1918.767 kb on + strand, within PFLU_RS08610at 1918.767 kb on + strand, within PFLU_RS08610at 1918.767 kb on + strand, within PFLU_RS08610at 1918.768 kb on - strand, within PFLU_RS08610at 1918.768 kb on - strand, within PFLU_RS08610at 1918.768 kb on - strand, within PFLU_RS08610at 1918.768 kb on - strand, within PFLU_RS08610at 1918.833 kb on + strand, within PFLU_RS08610at 1918.833 kb on + strand, within PFLU_RS08610at 1918.833 kb on + strand, within PFLU_RS08610at 1918.833 kb on + strand, within PFLU_RS08610at 1918.833 kb on + strand, within PFLU_RS08610at 1918.834 kb on - strand, within PFLU_RS08610at 1918.834 kb on - strand, within PFLU_RS08610at 1918.834 kb on - strand, within PFLU_RS08610at 1918.834 kb on - strand, within PFLU_RS08610at 1918.834 kb on - strand, within PFLU_RS08610at 1918.834 kb on - strand, within PFLU_RS08610at 1918.834 kb on - strand, within PFLU_RS08610at 1918.834 kb on - strand, within PFLU_RS08610at 1918.916 kb on + strand, within PFLU_RS08610at 1918.916 kb on + strand, within PFLU_RS08610at 1918.916 kb on + strand, within PFLU_RS08610at 1918.916 kb on + strand, within PFLU_RS08610at 1918.965 kb on + strand, within PFLU_RS08610at 1918.965 kb on + strand, within PFLU_RS08610

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with MOPS
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1,917,039 + PFLU_RS08595 0.66 +0.8
1,917,039 + PFLU_RS08595 0.66 +0.6
1,917,039 + PFLU_RS08595 0.66 -0.8
1,917,040 - PFLU_RS08595 0.66 -0.2
1,917,040 - PFLU_RS08595 0.66 +1.1
1,917,101 + PFLU_RS08595 0.70 +0.6
1,917,102 - PFLU_RS08595 0.70 +0.7
1,917,102 - PFLU_RS08595 0.70 -1.7
1,917,304 + PFLU_RS08595 0.82 +0.4
1,917,304 + PFLU_RS08595 0.82 +0.2
1,917,534 - +0.0
1,917,534 - +0.2
1,917,534 - -0.4
1,917,677 + -0.9
1,917,677 + +0.5
1,917,677 + +0.6
1,917,677 + +1.0
1,917,677 + +0.6
1,917,677 + +1.9
1,917,678 - -0.3
1,917,678 - -0.0
1,917,678 - +1.5
1,917,678 - +0.1
1,917,678 - +1.0
1,917,679 + +0.0
1,917,679 + -0.0
1,917,679 + -1.9
1,917,679 + +1.3
1,917,679 + +1.8
1,917,679 + +1.1
1,917,679 + +0.1
1,917,679 + +0.5
1,917,679 + +0.9
1,917,679 + -0.2
1,917,680 + -1.1
1,917,680 - -0.1
1,917,680 - +0.5
1,917,680 - +0.2
1,917,680 - +1.2
1,917,680 - -1.1
1,917,740 + +0.3
1,917,741 - +1.2
1,917,741 - +0.1
1,917,741 - -0.6
1,917,741 - -1.5
1,917,753 + +0.6
1,917,753 + -0.1
1,917,753 + +0.1
1,917,753 + -0.4
1,917,754 - -0.6
1,917,754 - -0.2
1,917,754 - +0.1
1,917,754 - -0.5
1,917,754 - +0.2
1,917,919 + PFLU_RS08600 0.59 +1.7
1,917,919 + PFLU_RS08600 0.59 +0.3
1,917,919 + PFLU_RS08600 0.59 -1.9
1,917,919 + PFLU_RS08600 0.59 -1.2
1,917,920 - PFLU_RS08600 0.60 -0.5
1,917,920 - PFLU_RS08600 0.60 +0.8
1,917,920 - PFLU_RS08600 0.60 -1.2
1,917,920 - PFLU_RS08600 0.60 +1.7
1,917,920 - PFLU_RS08600 0.60 +0.6
1,918,037 + -0.1
1,918,037 + +0.3
1,918,037 + -0.4
1,918,037 + +0.6
1,918,037 + +0.3
1,918,037 + +0.8
1,918,037 + +0.6
1,918,038 - -0.7
1,918,038 - +0.7
1,918,041 + -0.8
1,918,041 + -1.7
1,918,054 + +1.2
1,918,076 + +0.4
1,918,224 + PFLU_RS08605 0.40 -0.1
1,918,224 + PFLU_RS08605 0.40 +0.3
1,918,224 + PFLU_RS08605 0.40 +0.3
1,918,224 + PFLU_RS08605 0.40 +0.4
1,918,225 - PFLU_RS08605 0.40 +0.6
1,918,294 + PFLU_RS08605 0.61 -1.0
1,918,307 + PFLU_RS08605 0.65 -0.5
1,918,307 + PFLU_RS08605 0.65 -0.3
1,918,308 - PFLU_RS08605 0.65 -0.5
1,918,308 - PFLU_RS08605 0.65 +0.3
1,918,308 - PFLU_RS08605 0.65 -1.7
1,918,308 - PFLU_RS08605 0.65 +0.6
1,918,309 + PFLU_RS08605 0.65 -0.7
1,918,309 + PFLU_RS08605 0.65 +0.8
1,918,309 + PFLU_RS08605 0.65 +1.0
1,918,309 + PFLU_RS08605 0.65 +1.1
1,918,309 + PFLU_RS08605 0.65 +0.8
1,918,309 + PFLU_RS08605 0.65 +0.8
1,918,310 - PFLU_RS08605 0.65 -0.3
1,918,310 - PFLU_RS08605 0.65 -0.6
1,918,310 - PFLU_RS08605 0.65 +0.2
1,918,310 - PFLU_RS08605 0.65 -1.8
1,918,310 - PFLU_RS08605 0.65 +0.6
1,918,318 + PFLU_RS08605 0.68 +0.2
1,918,318 + PFLU_RS08605 0.68 -1.0
1,918,319 - PFLU_RS08605 0.68 +1.2
1,918,319 - PFLU_RS08605 0.68 +1.0
1,918,435 + +0.2
1,918,435 + -1.5
1,918,436 - +0.0
1,918,436 - -0.0
1,918,545 + -1.0
1,918,545 + -0.2
1,918,545 + -0.0
1,918,545 + +0.3
1,918,545 + +0.1
1,918,545 + +0.2
1,918,545 + +0.5
1,918,546 - -1.0
1,918,546 - +0.6
1,918,546 - -0.3
1,918,546 - +0.2
1,918,546 - -0.6
1,918,546 - -0.7
1,918,689 + PFLU_RS08610 0.22 +0.6
1,918,689 + PFLU_RS08610 0.22 -0.1
1,918,690 - PFLU_RS08610 0.22 -1.1
1,918,690 - PFLU_RS08610 0.22 -1.1
1,918,690 - PFLU_RS08610 0.22 -0.1
1,918,710 + PFLU_RS08610 0.24 -0.5
1,918,710 + PFLU_RS08610 0.24 +0.6
1,918,710 + PFLU_RS08610 0.24 -0.3
1,918,710 + PFLU_RS08610 0.24 +1.2
1,918,710 + PFLU_RS08610 0.24 -0.1
1,918,710 + PFLU_RS08610 0.24 +1.0
1,918,710 + PFLU_RS08610 0.24 +0.6
1,918,710 + PFLU_RS08610 0.24 -2.1
1,918,710 + PFLU_RS08610 0.24 -0.3
1,918,711 - PFLU_RS08610 0.24 +0.3
1,918,711 - PFLU_RS08610 0.24 +0.7
1,918,711 - PFLU_RS08610 0.24 -1.2
1,918,711 - PFLU_RS08610 0.24 +1.0
1,918,711 - PFLU_RS08610 0.24 -0.8
1,918,711 - PFLU_RS08610 0.24 -0.9
1,918,711 - PFLU_RS08610 0.24 +0.1
1,918,711 - PFLU_RS08610 0.24 -1.0
1,918,711 - PFLU_RS08610 0.24 -1.2
1,918,711 - PFLU_RS08610 0.24 +0.1
1,918,711 - PFLU_RS08610 0.24 +1.3
1,918,713 + PFLU_RS08610 0.24 -0.5
1,918,713 + PFLU_RS08610 0.24 +0.1
1,918,713 + PFLU_RS08610 0.24 +0.3
1,918,713 + PFLU_RS08610 0.24 -0.6
1,918,713 + PFLU_RS08610 0.24 +0.1
1,918,713 + PFLU_RS08610 0.24 -0.1
1,918,713 + PFLU_RS08610 0.24 +0.5
1,918,713 + PFLU_RS08610 0.24 +0.2
1,918,713 + PFLU_RS08610 0.24 +1.4
1,918,713 + PFLU_RS08610 0.24 +0.4
1,918,714 - PFLU_RS08610 0.24 -0.5
1,918,714 - PFLU_RS08610 0.24 -0.1
1,918,714 - PFLU_RS08610 0.24 -0.3
1,918,767 + PFLU_RS08610 0.30 -0.5
1,918,767 + PFLU_RS08610 0.30 +0.8
1,918,767 + PFLU_RS08610 0.30 -0.7
1,918,767 + PFLU_RS08610 0.30 -0.1
1,918,767 + PFLU_RS08610 0.30 +0.9
1,918,768 - PFLU_RS08610 0.30 +1.6
1,918,768 - PFLU_RS08610 0.30 +1.2
1,918,768 - PFLU_RS08610 0.30 +1.5
1,918,768 - PFLU_RS08610 0.30 +0.3
1,918,833 + PFLU_RS08610 0.38 -0.3
1,918,833 + PFLU_RS08610 0.38 +0.2
1,918,833 + PFLU_RS08610 0.38 -0.9
1,918,833 + PFLU_RS08610 0.38 -0.1
1,918,833 + PFLU_RS08610 0.38 +0.2
1,918,834 - PFLU_RS08610 0.38 -0.5
1,918,834 - PFLU_RS08610 0.38 -0.3
1,918,834 - PFLU_RS08610 0.38 +0.9
1,918,834 - PFLU_RS08610 0.38 -0.8
1,918,834 - PFLU_RS08610 0.38 -1.1
1,918,834 - PFLU_RS08610 0.38 -0.0
1,918,834 - PFLU_RS08610 0.38 -0.1
1,918,834 - PFLU_RS08610 0.38 +1.2
1,918,916 + PFLU_RS08610 0.47 -0.6
1,918,916 + PFLU_RS08610 0.47 -0.4
1,918,916 + PFLU_RS08610 0.47 -0.8
1,918,916 + PFLU_RS08610 0.47 -0.7
1,918,965 + PFLU_RS08610 0.53 +1.0
1,918,965 + PFLU_RS08610 0.53 +0.3

Or see this region's nucleotide sequence