Experiment: Sucrose (C) and Glycine betaine (N); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS05370 and PFLU_RS05375 are separated by 5 nucleotides PFLU_RS05375 and PFLU_RS05380 overlap by 1 nucleotides PFLU_RS05380 and PFLU_RS05385 are separated by 54 nucleotides
PFLU_RS05370: PFLU_RS05370 - EAL domain-containing protein, at 1,197,336 to 1,199,684
_RS05370
PFLU_RS05375: PFLU_RS05375 - DUF3034 family protein, at 1,199,690 to 1,200,553
_RS05375
PFLU_RS05380: PFLU_RS05380 - group 1 truncated hemoglobin, at 1,200,553 to 1,200,972
_RS05380
PFLU_RS05385: PFLU_RS05385 - glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase, at 1,201,027 to 1,203,438
_RS05385
Position (kb) 1200
1201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1199.598 kb on + strand at 1199.739 kb on + strand at 1199.739 kb on + strand at 1199.739 kb on + strand at 1199.740 kb on - strand at 1199.818 kb on + strand, within PFLU_RS05375 at 1199.818 kb on + strand, within PFLU_RS05375 at 1199.818 kb on + strand, within PFLU_RS05375 at 1199.818 kb on + strand, within PFLU_RS05375 at 1199.819 kb on - strand, within PFLU_RS05375 at 1199.939 kb on + strand, within PFLU_RS05375 at 1199.939 kb on + strand, within PFLU_RS05375 at 1199.939 kb on + strand, within PFLU_RS05375 at 1199.939 kb on + strand, within PFLU_RS05375 at 1199.939 kb on + strand, within PFLU_RS05375 at 1199.939 kb on + strand, within PFLU_RS05375 at 1199.940 kb on - strand, within PFLU_RS05375 at 1200.054 kb on + strand, within PFLU_RS05375 at 1200.055 kb on - strand, within PFLU_RS05375 at 1200.055 kb on - strand, within PFLU_RS05375 at 1200.077 kb on + strand, within PFLU_RS05375 at 1200.077 kb on + strand, within PFLU_RS05375 at 1200.077 kb on + strand, within PFLU_RS05375 at 1200.078 kb on - strand, within PFLU_RS05375 at 1200.078 kb on - strand, within PFLU_RS05375 at 1200.078 kb on - strand, within PFLU_RS05375 at 1200.113 kb on + strand, within PFLU_RS05375 at 1200.113 kb on + strand, within PFLU_RS05375 at 1200.113 kb on + strand, within PFLU_RS05375 at 1200.114 kb on - strand, within PFLU_RS05375 at 1200.114 kb on - strand, within PFLU_RS05375 at 1200.114 kb on - strand, within PFLU_RS05375 at 1200.181 kb on + strand, within PFLU_RS05375 at 1200.182 kb on + strand, within PFLU_RS05375 at 1200.224 kb on + strand, within PFLU_RS05375 at 1200.225 kb on - strand, within PFLU_RS05375 at 1200.225 kb on - strand, within PFLU_RS05375 at 1200.255 kb on - strand, within PFLU_RS05375 at 1200.471 kb on + strand at 1200.471 kb on + strand at 1200.471 kb on + strand at 1200.472 kb on - strand at 1200.472 kb on - strand at 1200.472 kb on - strand at 1200.472 kb on - strand at 1200.472 kb on - strand at 1200.472 kb on - strand at 1200.472 kb on - strand at 1200.479 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.527 kb on + strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.528 kb on - strand at 1200.563 kb on + strand at 1200.569 kb on + strand at 1200.569 kb on + strand at 1200.629 kb on - strand, within PFLU_RS05380 at 1200.629 kb on - strand, within PFLU_RS05380 at 1200.733 kb on - strand, within PFLU_RS05380 at 1200.771 kb on + strand, within PFLU_RS05380 at 1200.771 kb on + strand, within PFLU_RS05380 at 1200.772 kb on - strand, within PFLU_RS05380 at 1200.772 kb on - strand, within PFLU_RS05380 at 1200.796 kb on + strand, within PFLU_RS05380 at 1200.797 kb on - strand, within PFLU_RS05380 at 1200.797 kb on - strand, within PFLU_RS05380 at 1200.797 kb on - strand, within PFLU_RS05380 at 1200.797 kb on - strand, within PFLU_RS05380 at 1201.028 kb on + strand at 1201.029 kb on - strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.055 kb on + strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.056 kb on - strand at 1201.071 kb on + strand at 1201.109 kb on + strand at 1201.109 kb on + strand at 1201.109 kb on + strand at 1201.109 kb on + strand at 1201.109 kb on + strand at 1201.109 kb on + strand at 1201.109 kb on + strand at 1201.109 kb on + strand at 1201.109 kb on + strand at 1201.110 kb on - strand at 1201.110 kb on - strand at 1201.110 kb on - strand at 1201.133 kb on + strand at 1201.133 kb on + strand at 1201.133 kb on + strand at 1201.134 kb on - strand at 1201.134 kb on - strand at 1201.134 kb on - strand at 1201.134 kb on - strand at 1201.134 kb on - strand at 1201.134 kb on - strand at 1201.205 kb on + strand at 1201.206 kb on - strand at 1201.206 kb on - strand at 1201.218 kb on - strand at 1201.218 kb on - strand at 1201.281 kb on + strand, within PFLU_RS05385 at 1201.281 kb on + strand, within PFLU_RS05385 at 1201.281 kb on + strand, within PFLU_RS05385 at 1201.282 kb on - strand, within PFLU_RS05385 at 1201.282 kb on - strand, within PFLU_RS05385 at 1201.282 kb on - strand, within PFLU_RS05385 at 1201.282 kb on - strand, within PFLU_RS05385 at 1201.282 kb on - strand, within PFLU_RS05385 at 1201.285 kb on + strand, within PFLU_RS05385 at 1201.285 kb on + strand, within PFLU_RS05385 at 1201.285 kb on + strand, within PFLU_RS05385 at 1201.285 kb on + strand, within PFLU_RS05385 at 1201.286 kb on - strand, within PFLU_RS05385 at 1201.388 kb on + strand, within PFLU_RS05385 at 1201.388 kb on + strand, within PFLU_RS05385 at 1201.388 kb on + strand, within PFLU_RS05385 at 1201.388 kb on + strand, within PFLU_RS05385 at 1201.388 kb on + strand, within PFLU_RS05385 at 1201.388 kb on + strand, within PFLU_RS05385 at 1201.388 kb on + strand, within PFLU_RS05385 at 1201.388 kb on + strand, within PFLU_RS05385 at 1201.389 kb on - strand, within PFLU_RS05385 at 1201.389 kb on - strand, within PFLU_RS05385 at 1201.389 kb on - strand, within PFLU_RS05385 at 1201.389 kb on - strand, within PFLU_RS05385 at 1201.389 kb on - strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.556 kb on + strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.557 kb on - strand, within PFLU_RS05385 at 1201.629 kb on + strand, within PFLU_RS05385 at 1201.629 kb on + strand, within PFLU_RS05385 at 1201.630 kb on - strand, within PFLU_RS05385 at 1201.630 kb on - strand, within PFLU_RS05385 at 1201.630 kb on - strand, within PFLU_RS05385 at 1201.630 kb on - strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.889 kb on + strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385 at 1201.890 kb on - strand, within PFLU_RS05385
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with MOPS remove 1,199,598 + +1.4 1,199,739 + -1.9 1,199,739 + +0.7 1,199,739 + -0.6 1,199,740 - +1.3 1,199,818 + PFLU_RS05375 0.15 -0.3 1,199,818 + PFLU_RS05375 0.15 +0.1 1,199,818 + PFLU_RS05375 0.15 +0.2 1,199,818 + PFLU_RS05375 0.15 -0.4 1,199,819 - PFLU_RS05375 0.15 +0.4 1,199,939 + PFLU_RS05375 0.29 +0.3 1,199,939 + PFLU_RS05375 0.29 +0.4 1,199,939 + PFLU_RS05375 0.29 +0.4 1,199,939 + PFLU_RS05375 0.29 -0.2 1,199,939 + PFLU_RS05375 0.29 -1.9 1,199,939 + PFLU_RS05375 0.29 -0.0 1,199,940 - PFLU_RS05375 0.29 -0.9 1,200,054 + PFLU_RS05375 0.42 +0.4 1,200,055 - PFLU_RS05375 0.42 +0.4 1,200,055 - PFLU_RS05375 0.42 -0.4 1,200,077 + PFLU_RS05375 0.45 +0.5 1,200,077 + PFLU_RS05375 0.45 +0.3 1,200,077 + PFLU_RS05375 0.45 +0.9 1,200,078 - PFLU_RS05375 0.45 +0.1 1,200,078 - PFLU_RS05375 0.45 -0.9 1,200,078 - PFLU_RS05375 0.45 -1.8 1,200,113 + PFLU_RS05375 0.49 +0.4 1,200,113 + PFLU_RS05375 0.49 +0.2 1,200,113 + PFLU_RS05375 0.49 +0.2 1,200,114 - PFLU_RS05375 0.49 +0.5 1,200,114 - PFLU_RS05375 0.49 +0.9 1,200,114 - PFLU_RS05375 0.49 -1.0 1,200,181 + PFLU_RS05375 0.57 -0.9 1,200,182 + PFLU_RS05375 0.57 -1.8 1,200,224 + PFLU_RS05375 0.62 -0.9 1,200,225 - PFLU_RS05375 0.62 +0.8 1,200,225 - PFLU_RS05375 0.62 +0.1 1,200,255 - PFLU_RS05375 0.65 -0.3 1,200,471 + -0.9 1,200,471 + -0.5 1,200,471 + +0.1 1,200,472 - -0.4 1,200,472 - -1.0 1,200,472 - +0.7 1,200,472 - -0.0 1,200,472 - +0.7 1,200,472 - -1.5 1,200,472 - -0.2 1,200,479 + +0.0 1,200,527 + -0.0 1,200,527 + -0.2 1,200,527 + +0.5 1,200,527 + -1.1 1,200,527 + +2.6 1,200,527 + +0.1 1,200,527 + +0.3 1,200,527 + -0.1 1,200,527 + +1.0 1,200,527 + -0.7 1,200,527 + -0.2 1,200,527 + -0.3 1,200,527 + -0.9 1,200,527 + -0.3 1,200,528 - -0.9 1,200,528 - -1.1 1,200,528 - -1.3 1,200,528 - +0.9 1,200,528 - -0.9 1,200,528 - -1.0 1,200,528 - +0.9 1,200,528 - -1.0 1,200,528 - -0.6 1,200,528 - +0.1 1,200,528 - +0.8 1,200,528 - -1.7 1,200,528 - +0.3 1,200,563 + +0.6 1,200,569 + +1.3 1,200,569 + -2.1 1,200,629 - PFLU_RS05380 0.18 -0.2 1,200,629 - PFLU_RS05380 0.18 +0.5 1,200,733 - PFLU_RS05380 0.43 -0.5 1,200,771 + PFLU_RS05380 0.52 +0.4 1,200,771 + PFLU_RS05380 0.52 +1.2 1,200,772 - PFLU_RS05380 0.52 +1.0 1,200,772 - PFLU_RS05380 0.52 -1.1 1,200,796 + PFLU_RS05380 0.58 +1.2 1,200,797 - PFLU_RS05380 0.58 +0.4 1,200,797 - PFLU_RS05380 0.58 -0.8 1,200,797 - PFLU_RS05380 0.58 +0.2 1,200,797 - PFLU_RS05380 0.58 +0.6 1,201,028 + -0.7 1,201,029 - -0.0 1,201,055 + -0.2 1,201,055 + +0.4 1,201,055 + -0.1 1,201,055 + +2.4 1,201,055 + -0.9 1,201,055 + +0.3 1,201,055 + +0.1 1,201,055 + -0.8 1,201,055 + -0.7 1,201,055 + +0.4 1,201,055 + +0.5 1,201,055 + +0.1 1,201,055 + -0.5 1,201,055 + -0.1 1,201,055 + +0.3 1,201,056 - -1.6 1,201,056 - +0.0 1,201,056 - -1.0 1,201,056 - +0.2 1,201,056 - -1.2 1,201,056 - +1.3 1,201,056 - -0.7 1,201,056 - -0.0 1,201,056 - -1.3 1,201,056 - -0.4 1,201,056 - +0.1 1,201,056 - +0.4 1,201,056 - -0.9 1,201,056 - -0.2 1,201,056 - +0.2 1,201,056 - -0.6 1,201,071 + -0.3 1,201,109 + -1.2 1,201,109 + -1.2 1,201,109 + -0.3 1,201,109 + -0.3 1,201,109 + -0.6 1,201,109 + -1.0 1,201,109 + -1.3 1,201,109 + -1.8 1,201,109 + -2.3 1,201,110 - -0.4 1,201,110 - -2.3 1,201,110 - -0.3 1,201,133 + -0.3 1,201,133 + +1.0 1,201,133 + -0.3 1,201,134 - -0.9 1,201,134 - +0.6 1,201,134 - +0.2 1,201,134 - +2.5 1,201,134 - -0.1 1,201,134 - -1.3 1,201,205 + +0.2 1,201,206 - -3.1 1,201,206 - +0.2 1,201,218 - -0.8 1,201,218 - -0.2 1,201,281 + PFLU_RS05385 0.11 -0.4 1,201,281 + PFLU_RS05385 0.11 -0.8 1,201,281 + PFLU_RS05385 0.11 +0.9 1,201,282 - PFLU_RS05385 0.11 +1.2 1,201,282 - PFLU_RS05385 0.11 +0.0 1,201,282 - PFLU_RS05385 0.11 -0.6 1,201,282 - PFLU_RS05385 0.11 +1.7 1,201,282 - PFLU_RS05385 0.11 +0.9 1,201,285 + PFLU_RS05385 0.11 +0.5 1,201,285 + PFLU_RS05385 0.11 -1.3 1,201,285 + PFLU_RS05385 0.11 +0.2 1,201,285 + PFLU_RS05385 0.11 +0.1 1,201,286 - PFLU_RS05385 0.11 +0.3 1,201,388 + PFLU_RS05385 0.15 +1.2 1,201,388 + PFLU_RS05385 0.15 -0.0 1,201,388 + PFLU_RS05385 0.15 +0.8 1,201,388 + PFLU_RS05385 0.15 +0.4 1,201,388 + PFLU_RS05385 0.15 -1.0 1,201,388 + PFLU_RS05385 0.15 -0.1 1,201,388 + PFLU_RS05385 0.15 -0.2 1,201,388 + PFLU_RS05385 0.15 -0.1 1,201,389 - PFLU_RS05385 0.15 +1.1 1,201,389 - PFLU_RS05385 0.15 -0.1 1,201,389 - PFLU_RS05385 0.15 +0.5 1,201,389 - PFLU_RS05385 0.15 -0.1 1,201,389 - PFLU_RS05385 0.15 -1.5 1,201,556 + PFLU_RS05385 0.22 -0.0 1,201,556 + PFLU_RS05385 0.22 -1.0 1,201,556 + PFLU_RS05385 0.22 -0.0 1,201,556 + PFLU_RS05385 0.22 +2.0 1,201,556 + PFLU_RS05385 0.22 -0.4 1,201,556 + PFLU_RS05385 0.22 -0.5 1,201,556 + PFLU_RS05385 0.22 -0.4 1,201,556 + PFLU_RS05385 0.22 -1.7 1,201,556 + PFLU_RS05385 0.22 -1.8 1,201,556 + PFLU_RS05385 0.22 +0.6 1,201,557 - PFLU_RS05385 0.22 +0.7 1,201,557 - PFLU_RS05385 0.22 +0.4 1,201,557 - PFLU_RS05385 0.22 -1.9 1,201,557 - PFLU_RS05385 0.22 +0.2 1,201,557 - PFLU_RS05385 0.22 -0.7 1,201,557 - PFLU_RS05385 0.22 -0.5 1,201,557 - PFLU_RS05385 0.22 -0.1 1,201,557 - PFLU_RS05385 0.22 +0.0 1,201,557 - PFLU_RS05385 0.22 +1.6 1,201,557 - PFLU_RS05385 0.22 -0.0 1,201,557 - PFLU_RS05385 0.22 -0.1 1,201,557 - PFLU_RS05385 0.22 -1.0 1,201,557 - PFLU_RS05385 0.22 -0.7 1,201,557 - PFLU_RS05385 0.22 -0.4 1,201,629 + PFLU_RS05385 0.25 -1.0 1,201,629 + PFLU_RS05385 0.25 -1.8 1,201,630 - PFLU_RS05385 0.25 +0.1 1,201,630 - PFLU_RS05385 0.25 +0.3 1,201,630 - PFLU_RS05385 0.25 +1.2 1,201,630 - PFLU_RS05385 0.25 +0.3 1,201,889 + PFLU_RS05385 0.36 -1.1 1,201,889 + PFLU_RS05385 0.36 -1.2 1,201,889 + PFLU_RS05385 0.36 +0.5 1,201,889 + PFLU_RS05385 0.36 -1.0 1,201,889 + PFLU_RS05385 0.36 +0.3 1,201,889 + PFLU_RS05385 0.36 +1.1 1,201,889 + PFLU_RS05385 0.36 -0.4 1,201,889 + PFLU_RS05385 0.36 +1.4 1,201,889 + PFLU_RS05385 0.36 -2.7 1,201,890 - PFLU_RS05385 0.36 -0.3 1,201,890 - PFLU_RS05385 0.36 +0.0 1,201,890 - PFLU_RS05385 0.36 -0.2 1,201,890 - PFLU_RS05385 0.36 -0.1 1,201,890 - PFLU_RS05385 0.36 -0.6 1,201,890 - PFLU_RS05385 0.36 +0.5 1,201,890 - PFLU_RS05385 0.36 +0.8 1,201,890 - PFLU_RS05385 0.36 -0.7 1,201,890 - PFLU_RS05385 0.36 -0.1 1,201,890 - PFLU_RS05385 0.36 +0.1 1,201,890 - PFLU_RS05385 0.36 -0.7 1,201,890 - PFLU_RS05385 0.36 +0.5 1,201,890 - PFLU_RS05385 0.36 -0.1
Or see this region's nucleotide sequence