Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS02115

Experiment: Sucrose (C) and Glycine betaine (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02110 and PFLU_RS02115 overlap by 11 nucleotidesPFLU_RS02115 and PFLU_RS02120 are separated by 44 nucleotidesPFLU_RS02120 and PFLU_RS02125 overlap by 8 nucleotides PFLU_RS02110: PFLU_RS02110 - MMPL family transporter, at 474,987 to 477,299 _RS02110 PFLU_RS02115: PFLU_RS02115 - outer membrane lipoprotein carrier protein LolA, at 477,289 to 477,942 _RS02115 PFLU_RS02120: PFLU_RS02120 - acyl-CoA thioesterase, at 477,987 to 478,412 _RS02120 PFLU_RS02125: PFLU_RS02125 - aromatic amino acid lyase, at 478,405 to 479,946 _RS02125 Position (kb) 477 478Strain fitness (log2 ratio) -2 -1 0 1 2at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.335 kb on + strand, within PFLU_RS02110at 476.336 kb on - strand, within PFLU_RS02110at 476.336 kb on - strand, within PFLU_RS02110at 476.336 kb on - strand, within PFLU_RS02110at 476.336 kb on - strand, within PFLU_RS02110at 476.336 kb on - strand, within PFLU_RS02110at 476.336 kb on - strand, within PFLU_RS02110at 476.382 kb on + strand, within PFLU_RS02110at 476.382 kb on + strand, within PFLU_RS02110at 476.382 kb on + strand, within PFLU_RS02110at 476.402 kb on + strand, within PFLU_RS02110at 476.402 kb on + strand, within PFLU_RS02110at 476.403 kb on - strand, within PFLU_RS02110at 476.403 kb on - strand, within PFLU_RS02110at 476.403 kb on - strand, within PFLU_RS02110at 476.584 kb on + strand, within PFLU_RS02110at 476.584 kb on + strand, within PFLU_RS02110at 476.715 kb on + strand, within PFLU_RS02110at 476.715 kb on + strand, within PFLU_RS02110at 476.715 kb on + strand, within PFLU_RS02110at 476.716 kb on - strand, within PFLU_RS02110at 476.716 kb on - strand, within PFLU_RS02110at 476.716 kb on - strand, within PFLU_RS02110at 476.808 kb on - strand, within PFLU_RS02110at 476.883 kb on + strand, within PFLU_RS02110at 476.883 kb on + strand, within PFLU_RS02110at 476.883 kb on + strand, within PFLU_RS02110at 476.884 kb on - strand, within PFLU_RS02110at 476.884 kb on - strand, within PFLU_RS02110at 476.884 kb on - strand, within PFLU_RS02110at 476.884 kb on - strand, within PFLU_RS02110at 476.884 kb on - strand, within PFLU_RS02110at 476.915 kb on + strand, within PFLU_RS02110at 476.915 kb on + strand, within PFLU_RS02110at 476.915 kb on + strand, within PFLU_RS02110at 477.052 kb on - strand, within PFLU_RS02110at 477.052 kb on - strand, within PFLU_RS02110at 477.837 kb on + strand, within PFLU_RS02115at 477.837 kb on + strand, within PFLU_RS02115at 477.837 kb on + strand, within PFLU_RS02115at 477.838 kb on - strand, within PFLU_RS02115at 477.907 kb on + strandat 477.907 kb on + strandat 477.907 kb on + strandat 477.907 kb on + strandat 477.907 kb on + strandat 477.907 kb on + strandat 477.908 kb on - strandat 477.908 kb on - strandat 477.927 kb on + strandat 477.928 kb on - strandat 478.005 kb on + strandat 478.005 kb on + strandat 478.005 kb on + strandat 478.005 kb on + strandat 478.006 kb on - strandat 478.126 kb on + strand, within PFLU_RS02120at 478.126 kb on + strand, within PFLU_RS02120at 478.126 kb on + strand, within PFLU_RS02120at 478.126 kb on + strand, within PFLU_RS02120at 478.126 kb on + strand, within PFLU_RS02120at 478.126 kb on + strand, within PFLU_RS02120at 478.127 kb on - strand, within PFLU_RS02120at 478.127 kb on - strand, within PFLU_RS02120at 478.127 kb on - strand, within PFLU_RS02120at 478.127 kb on - strand, within PFLU_RS02120at 478.127 kb on - strand, within PFLU_RS02120at 478.127 kb on - strand, within PFLU_RS02120at 478.127 kb on - strand, within PFLU_RS02120at 478.203 kb on + strand, within PFLU_RS02120at 478.203 kb on + strand, within PFLU_RS02120at 478.203 kb on + strand, within PFLU_RS02120at 478.204 kb on - strand, within PFLU_RS02120at 478.207 kb on + strand, within PFLU_RS02120at 478.207 kb on + strand, within PFLU_RS02120at 478.207 kb on + strand, within PFLU_RS02120at 478.264 kb on + strand, within PFLU_RS02120at 478.264 kb on + strand, within PFLU_RS02120at 478.264 kb on + strand, within PFLU_RS02120at 478.264 kb on + strand, within PFLU_RS02120at 478.264 kb on + strand, within PFLU_RS02120at 478.264 kb on + strand, within PFLU_RS02120at 478.264 kb on + strand, within PFLU_RS02120at 478.264 kb on + strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.265 kb on - strand, within PFLU_RS02120at 478.312 kb on + strand, within PFLU_RS02120at 478.312 kb on + strand, within PFLU_RS02120at 478.312 kb on + strand, within PFLU_RS02120at 478.313 kb on - strand, within PFLU_RS02120at 478.313 kb on - strand, within PFLU_RS02120at 478.322 kb on - strand, within PFLU_RS02120at 478.322 kb on - strand, within PFLU_RS02120at 478.322 kb on - strand, within PFLU_RS02120at 478.322 kb on - strand, within PFLU_RS02120at 478.322 kb on - strand, within PFLU_RS02120at 478.346 kb on + strand, within PFLU_RS02120at 478.346 kb on + strand, within PFLU_RS02120at 478.346 kb on + strand, within PFLU_RS02120at 478.347 kb on - strand, within PFLU_RS02120at 478.347 kb on - strand, within PFLU_RS02120at 478.347 kb on - strand, within PFLU_RS02120at 478.347 kb on - strand, within PFLU_RS02120at 478.347 kb on - strand, within PFLU_RS02120at 478.347 kb on - strand, within PFLU_RS02120at 478.347 kb on - strand, within PFLU_RS02120at 478.406 kb on + strandat 478.847 kb on + strand, within PFLU_RS02125at 478.848 kb on - strand, within PFLU_RS02125at 478.848 kb on - strand, within PFLU_RS02125at 478.848 kb on - strand, within PFLU_RS02125

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with MOPS
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476,335 + PFLU_RS02110 0.58 -0.6
476,335 + PFLU_RS02110 0.58 +0.1
476,335 + PFLU_RS02110 0.58 -0.2
476,335 + PFLU_RS02110 0.58 +0.1
476,335 + PFLU_RS02110 0.58 -0.5
476,335 + PFLU_RS02110 0.58 -0.6
476,335 + PFLU_RS02110 0.58 +0.1
476,335 + PFLU_RS02110 0.58 +0.4
476,335 + PFLU_RS02110 0.58 +0.4
476,335 + PFLU_RS02110 0.58 +1.6
476,335 + PFLU_RS02110 0.58 -1.5
476,335 + PFLU_RS02110 0.58 +0.2
476,336 - PFLU_RS02110 0.58 +0.6
476,336 - PFLU_RS02110 0.58 -0.0
476,336 - PFLU_RS02110 0.58 -1.8
476,336 - PFLU_RS02110 0.58 +0.2
476,336 - PFLU_RS02110 0.58 +1.3
476,336 - PFLU_RS02110 0.58 -0.8
476,382 + PFLU_RS02110 0.60 -1.1
476,382 + PFLU_RS02110 0.60 +0.1
476,382 + PFLU_RS02110 0.60 +1.0
476,402 + PFLU_RS02110 0.61 -0.3
476,402 + PFLU_RS02110 0.61 -1.9
476,403 - PFLU_RS02110 0.61 +0.4
476,403 - PFLU_RS02110 0.61 -1.2
476,403 - PFLU_RS02110 0.61 -0.1
476,584 + PFLU_RS02110 0.69 -0.1
476,584 + PFLU_RS02110 0.69 +0.9
476,715 + PFLU_RS02110 0.75 +0.8
476,715 + PFLU_RS02110 0.75 -1.2
476,715 + PFLU_RS02110 0.75 +0.5
476,716 - PFLU_RS02110 0.75 -0.7
476,716 - PFLU_RS02110 0.75 +0.1
476,716 - PFLU_RS02110 0.75 -0.2
476,808 - PFLU_RS02110 0.79 +0.8
476,883 + PFLU_RS02110 0.82 +0.3
476,883 + PFLU_RS02110 0.82 +0.5
476,883 + PFLU_RS02110 0.82 +0.1
476,884 - PFLU_RS02110 0.82 -0.3
476,884 - PFLU_RS02110 0.82 +0.3
476,884 - PFLU_RS02110 0.82 -0.8
476,884 - PFLU_RS02110 0.82 -0.9
476,884 - PFLU_RS02110 0.82 +1.6
476,915 + PFLU_RS02110 0.83 +0.4
476,915 + PFLU_RS02110 0.83 +0.4
476,915 + PFLU_RS02110 0.83 +1.4
477,052 - PFLU_RS02110 0.89 -0.1
477,052 - PFLU_RS02110 0.89 -0.9
477,837 + PFLU_RS02115 0.84 -0.1
477,837 + PFLU_RS02115 0.84 +0.7
477,837 + PFLU_RS02115 0.84 +0.2
477,838 - PFLU_RS02115 0.84 +0.8
477,907 + +0.8
477,907 + -0.7
477,907 + -0.4
477,907 + -1.0
477,907 + -0.0
477,907 + +0.9
477,908 - +1.0
477,908 - +1.3
477,927 + -0.0
477,928 - -1.9
478,005 + +1.2
478,005 + +0.0
478,005 + +0.3
478,005 + -0.3
478,006 - +1.3
478,126 + PFLU_RS02120 0.33 +0.2
478,126 + PFLU_RS02120 0.33 -1.0
478,126 + PFLU_RS02120 0.33 +0.2
478,126 + PFLU_RS02120 0.33 -0.3
478,126 + PFLU_RS02120 0.33 +0.3
478,126 + PFLU_RS02120 0.33 +1.2
478,127 - PFLU_RS02120 0.33 +0.5
478,127 - PFLU_RS02120 0.33 -0.1
478,127 - PFLU_RS02120 0.33 +0.8
478,127 - PFLU_RS02120 0.33 +0.5
478,127 - PFLU_RS02120 0.33 +0.6
478,127 - PFLU_RS02120 0.33 +0.3
478,127 - PFLU_RS02120 0.33 +0.6
478,203 + PFLU_RS02120 0.51 -0.2
478,203 + PFLU_RS02120 0.51 +0.1
478,203 + PFLU_RS02120 0.51 +0.9
478,204 - PFLU_RS02120 0.51 +0.6
478,207 + PFLU_RS02120 0.52 +0.3
478,207 + PFLU_RS02120 0.52 +2.3
478,207 + PFLU_RS02120 0.52 -2.2
478,264 + PFLU_RS02120 0.65 +0.2
478,264 + PFLU_RS02120 0.65 +0.7
478,264 + PFLU_RS02120 0.65 -1.6
478,264 + PFLU_RS02120 0.65 +0.8
478,264 + PFLU_RS02120 0.65 -0.8
478,264 + PFLU_RS02120 0.65 +0.5
478,264 + PFLU_RS02120 0.65 +0.4
478,264 + PFLU_RS02120 0.65 +0.2
478,265 - PFLU_RS02120 0.65 +1.4
478,265 - PFLU_RS02120 0.65 -0.7
478,265 - PFLU_RS02120 0.65 +0.9
478,265 - PFLU_RS02120 0.65 +0.8
478,265 - PFLU_RS02120 0.65 +0.6
478,265 - PFLU_RS02120 0.65 +0.4
478,265 - PFLU_RS02120 0.65 -0.4
478,265 - PFLU_RS02120 0.65 +0.8
478,265 - PFLU_RS02120 0.65 +0.5
478,265 - PFLU_RS02120 0.65 -0.0
478,312 + PFLU_RS02120 0.76 +0.8
478,312 + PFLU_RS02120 0.76 +0.3
478,312 + PFLU_RS02120 0.76 +0.5
478,313 - PFLU_RS02120 0.77 -0.2
478,313 - PFLU_RS02120 0.77 -0.5
478,322 - PFLU_RS02120 0.79 +0.2
478,322 - PFLU_RS02120 0.79 +0.1
478,322 - PFLU_RS02120 0.79 +0.2
478,322 - PFLU_RS02120 0.79 -0.1
478,322 - PFLU_RS02120 0.79 -0.5
478,346 + PFLU_RS02120 0.84 -0.3
478,346 + PFLU_RS02120 0.84 +0.1
478,346 + PFLU_RS02120 0.84 +0.0
478,347 - PFLU_RS02120 0.85 -0.5
478,347 - PFLU_RS02120 0.85 +1.4
478,347 - PFLU_RS02120 0.85 +0.0
478,347 - PFLU_RS02120 0.85 +0.6
478,347 - PFLU_RS02120 0.85 +0.3
478,347 - PFLU_RS02120 0.85 -0.6
478,347 - PFLU_RS02120 0.85 +0.3
478,406 + +0.2
478,847 + PFLU_RS02125 0.29 -0.6
478,848 - PFLU_RS02125 0.29 +0.1
478,848 - PFLU_RS02125 0.29 -0.1
478,848 - PFLU_RS02125 0.29 +2.4

Or see this region's nucleotide sequence