Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01005

Experiment: Sucrose (C) and Glycine betaine (N); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS01000 and PFLU_RS01005 are separated by 16 nucleotidesPFLU_RS01005 and PFLU_RS01010 overlap by 4 nucleotides PFLU_RS01000: PFLU_RS01000 - arylsulfatase, at 221,906 to 223,516 _RS01000 PFLU_RS01005: PFLU_RS01005 - ABC transporter ATP-binding protein, at 223,533 to 224,348 _RS01005 PFLU_RS01010: PFLU_RS01010 - ABC transporter permease, at 224,345 to 225,937 _RS01010 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.589 kb on + strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.590 kb on - strand, within PFLU_RS01000at 222.618 kb on + strand, within PFLU_RS01000at 222.618 kb on + strand, within PFLU_RS01000at 222.618 kb on + strand, within PFLU_RS01000at 222.619 kb on - strand, within PFLU_RS01000at 222.619 kb on - strand, within PFLU_RS01000at 222.619 kb on - strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.669 kb on + strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.670 kb on - strand, within PFLU_RS01000at 222.846 kb on + strand, within PFLU_RS01000at 222.847 kb on - strand, within PFLU_RS01000at 222.906 kb on + strand, within PFLU_RS01000at 222.906 kb on + strand, within PFLU_RS01000at 222.906 kb on + strand, within PFLU_RS01000at 222.907 kb on - strand, within PFLU_RS01000at 222.946 kb on - strand, within PFLU_RS01000at 222.946 kb on - strand, within PFLU_RS01000at 222.981 kb on + strand, within PFLU_RS01000at 222.981 kb on + strand, within PFLU_RS01000at 222.981 kb on + strand, within PFLU_RS01000at 222.981 kb on + strand, within PFLU_RS01000at 222.981 kb on + strand, within PFLU_RS01000at 222.981 kb on + strand, within PFLU_RS01000at 222.981 kb on + strand, within PFLU_RS01000at 222.981 kb on + strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 222.982 kb on - strand, within PFLU_RS01000at 223.026 kb on + strand, within PFLU_RS01000at 223.026 kb on + strand, within PFLU_RS01000at 223.026 kb on + strand, within PFLU_RS01000at 223.027 kb on - strand, within PFLU_RS01000at 223.027 kb on - strand, within PFLU_RS01000at 223.027 kb on - strand, within PFLU_RS01000at 223.027 kb on - strand, within PFLU_RS01000at 223.027 kb on - strand, within PFLU_RS01000at 223.027 kb on - strand, within PFLU_RS01000at 223.027 kb on - strand, within PFLU_RS01000at 223.027 kb on - strand, within PFLU_RS01000at 223.071 kb on + strand, within PFLU_RS01000at 223.072 kb on - strand, within PFLU_RS01000at 223.089 kb on + strand, within PFLU_RS01000at 223.089 kb on + strand, within PFLU_RS01000at 223.090 kb on - strand, within PFLU_RS01000at 223.090 kb on - strand, within PFLU_RS01000at 223.251 kb on + strand, within PFLU_RS01000at 223.252 kb on - strand, within PFLU_RS01000at 223.252 kb on - strand, within PFLU_RS01000at 223.321 kb on + strand, within PFLU_RS01000at 223.321 kb on + strand, within PFLU_RS01000at 223.321 kb on + strand, within PFLU_RS01000at 223.321 kb on + strand, within PFLU_RS01000at 223.322 kb on - strand, within PFLU_RS01000at 223.322 kb on - strand, within PFLU_RS01000at 223.322 kb on - strand, within PFLU_RS01000at 223.322 kb on - strand, within PFLU_RS01000at 223.544 kb on + strandat 223.544 kb on + strandat 223.545 kb on - strandat 223.545 kb on - strandat 223.591 kb on + strandat 223.592 kb on - strandat 224.139 kb on - strand, within PFLU_RS01005at 224.139 kb on - strand, within PFLU_RS01005at 224.336 kb on + strandat 224.336 kb on + strandat 224.336 kb on + strandat 224.336 kb on + strandat 224.336 kb on + strandat 224.337 kb on - strandat 224.337 kb on - strandat 224.337 kb on - strandat 224.337 kb on - strandat 224.337 kb on - strandat 224.337 kb on - strandat 224.514 kb on + strand, within PFLU_RS01010at 224.514 kb on + strand, within PFLU_RS01010at 224.544 kb on + strand, within PFLU_RS01010at 224.544 kb on + strand, within PFLU_RS01010at 224.544 kb on + strand, within PFLU_RS01010at 224.544 kb on + strand, within PFLU_RS01010at 224.545 kb on - strand, within PFLU_RS01010at 224.545 kb on - strand, within PFLU_RS01010at 224.545 kb on - strand, within PFLU_RS01010at 224.597 kb on + strand, within PFLU_RS01010at 224.598 kb on - strand, within PFLU_RS01010at 224.725 kb on + strand, within PFLU_RS01010

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C) and Glycine betaine (N); with MOPS
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222,589 + PFLU_RS01000 0.42 -0.4
222,589 + PFLU_RS01000 0.42 +1.4
222,589 + PFLU_RS01000 0.42 -0.2
222,589 + PFLU_RS01000 0.42 -0.5
222,589 + PFLU_RS01000 0.42 +0.7
222,589 + PFLU_RS01000 0.42 -1.2
222,589 + PFLU_RS01000 0.42 +1.4
222,589 + PFLU_RS01000 0.42 -1.5
222,589 + PFLU_RS01000 0.42 +0.3
222,589 + PFLU_RS01000 0.42 +0.3
222,589 + PFLU_RS01000 0.42 -0.2
222,589 + PFLU_RS01000 0.42 +0.1
222,589 + PFLU_RS01000 0.42 -1.2
222,589 + PFLU_RS01000 0.42 -1.5
222,589 + PFLU_RS01000 0.42 +0.7
222,589 + PFLU_RS01000 0.42 -0.6
222,589 + PFLU_RS01000 0.42 -0.9
222,590 - PFLU_RS01000 0.42 +0.5
222,590 - PFLU_RS01000 0.42 -1.0
222,590 - PFLU_RS01000 0.42 +0.4
222,590 - PFLU_RS01000 0.42 -0.1
222,590 - PFLU_RS01000 0.42 +2.7
222,590 - PFLU_RS01000 0.42 -0.1
222,590 - PFLU_RS01000 0.42 -0.7
222,590 - PFLU_RS01000 0.42 +0.8
222,590 - PFLU_RS01000 0.42 -0.5
222,590 - PFLU_RS01000 0.42 -1.1
222,590 - PFLU_RS01000 0.42 +0.2
222,590 - PFLU_RS01000 0.42 -0.2
222,590 - PFLU_RS01000 0.42 +0.0
222,618 + PFLU_RS01000 0.44 +0.4
222,618 + PFLU_RS01000 0.44 +2.3
222,618 + PFLU_RS01000 0.44 -0.9
222,619 - PFLU_RS01000 0.44 -1.8
222,619 - PFLU_RS01000 0.44 +0.0
222,619 - PFLU_RS01000 0.44 -1.4
222,669 + PFLU_RS01000 0.47 -1.3
222,669 + PFLU_RS01000 0.47 +0.0
222,669 + PFLU_RS01000 0.47 +1.8
222,669 + PFLU_RS01000 0.47 +0.8
222,669 + PFLU_RS01000 0.47 -0.3
222,669 + PFLU_RS01000 0.47 +1.0
222,669 + PFLU_RS01000 0.47 -1.0
222,669 + PFLU_RS01000 0.47 -0.3
222,669 + PFLU_RS01000 0.47 -0.0
222,669 + PFLU_RS01000 0.47 +0.5
222,669 + PFLU_RS01000 0.47 -0.7
222,670 - PFLU_RS01000 0.47 -0.7
222,670 - PFLU_RS01000 0.47 -0.1
222,670 - PFLU_RS01000 0.47 +0.6
222,670 - PFLU_RS01000 0.47 -0.1
222,670 - PFLU_RS01000 0.47 -1.3
222,670 - PFLU_RS01000 0.47 +1.2
222,670 - PFLU_RS01000 0.47 +0.5
222,670 - PFLU_RS01000 0.47 -0.4
222,670 - PFLU_RS01000 0.47 +0.1
222,670 - PFLU_RS01000 0.47 +0.3
222,670 - PFLU_RS01000 0.47 +0.0
222,670 - PFLU_RS01000 0.47 -0.0
222,670 - PFLU_RS01000 0.47 +0.2
222,670 - PFLU_RS01000 0.47 +0.5
222,670 - PFLU_RS01000 0.47 +1.1
222,670 - PFLU_RS01000 0.47 +0.3
222,846 + PFLU_RS01000 0.58 +0.9
222,847 - PFLU_RS01000 0.58 -0.8
222,906 + PFLU_RS01000 0.62 -1.0
222,906 + PFLU_RS01000 0.62 -0.5
222,906 + PFLU_RS01000 0.62 -0.1
222,907 - PFLU_RS01000 0.62 +0.5
222,946 - PFLU_RS01000 0.65 -1.5
222,946 - PFLU_RS01000 0.65 +0.7
222,981 + PFLU_RS01000 0.67 -0.1
222,981 + PFLU_RS01000 0.67 +0.7
222,981 + PFLU_RS01000 0.67 +0.6
222,981 + PFLU_RS01000 0.67 +0.3
222,981 + PFLU_RS01000 0.67 +1.5
222,981 + PFLU_RS01000 0.67 +0.2
222,981 + PFLU_RS01000 0.67 -0.1
222,981 + PFLU_RS01000 0.67 -0.5
222,982 - PFLU_RS01000 0.67 -2.6
222,982 - PFLU_RS01000 0.67 +0.2
222,982 - PFLU_RS01000 0.67 +0.9
222,982 - PFLU_RS01000 0.67 +0.1
222,982 - PFLU_RS01000 0.67 +0.8
222,982 - PFLU_RS01000 0.67 +0.0
222,982 - PFLU_RS01000 0.67 +0.0
222,982 - PFLU_RS01000 0.67 -0.2
222,982 - PFLU_RS01000 0.67 +0.3
222,982 - PFLU_RS01000 0.67 -1.6
223,026 + PFLU_RS01000 0.70 +0.1
223,026 + PFLU_RS01000 0.70 -2.7
223,026 + PFLU_RS01000 0.70 -1.0
223,027 - PFLU_RS01000 0.70 -0.4
223,027 - PFLU_RS01000 0.70 +0.1
223,027 - PFLU_RS01000 0.70 -1.1
223,027 - PFLU_RS01000 0.70 +0.1
223,027 - PFLU_RS01000 0.70 +0.1
223,027 - PFLU_RS01000 0.70 +0.5
223,027 - PFLU_RS01000 0.70 -0.4
223,027 - PFLU_RS01000 0.70 -1.6
223,071 + PFLU_RS01000 0.72 -1.0
223,072 - PFLU_RS01000 0.72 +1.0
223,089 + PFLU_RS01000 0.73 -0.1
223,089 + PFLU_RS01000 0.73 +0.5
223,090 - PFLU_RS01000 0.73 +0.2
223,090 - PFLU_RS01000 0.73 +0.4
223,251 + PFLU_RS01000 0.83 +0.3
223,252 - PFLU_RS01000 0.84 -0.1
223,252 - PFLU_RS01000 0.84 +1.0
223,321 + PFLU_RS01000 0.88 +0.5
223,321 + PFLU_RS01000 0.88 -0.7
223,321 + PFLU_RS01000 0.88 -1.4
223,321 + PFLU_RS01000 0.88 +0.9
223,322 - PFLU_RS01000 0.88 -0.2
223,322 - PFLU_RS01000 0.88 +0.0
223,322 - PFLU_RS01000 0.88 -0.1
223,322 - PFLU_RS01000 0.88 +0.4
223,544 + +0.1
223,544 + -1.0
223,545 - +0.8
223,545 - -1.7
223,591 + +0.8
223,592 - +0.2
224,139 - PFLU_RS01005 0.74 +0.5
224,139 - PFLU_RS01005 0.74 +0.2
224,336 + +0.4
224,336 + -0.8
224,336 + -0.7
224,336 + +0.3
224,336 + -0.6
224,337 - -0.8
224,337 - -0.7
224,337 - -0.2
224,337 - -0.3
224,337 - +0.2
224,337 - +0.5
224,514 + PFLU_RS01010 0.11 -1.4
224,514 + PFLU_RS01010 0.11 -0.1
224,544 + PFLU_RS01010 0.12 -0.5
224,544 + PFLU_RS01010 0.12 -0.7
224,544 + PFLU_RS01010 0.12 +0.2
224,544 + PFLU_RS01010 0.12 +0.7
224,545 - PFLU_RS01010 0.13 +0.2
224,545 - PFLU_RS01010 0.13 -0.3
224,545 - PFLU_RS01010 0.13 -1.0
224,597 + PFLU_RS01010 0.16 -0.4
224,598 - PFLU_RS01010 0.16 +0.6
224,725 + PFLU_RS01010 0.24 +0.1

Or see this region's nucleotide sequence