Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16515

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16510 and BWI76_RS16515 are separated by 18 nucleotidesBWI76_RS16515 and BWI76_RS16520 are separated by 111 nucleotides BWI76_RS16510: BWI76_RS16510 - transcriptional repressor PurR, at 3,422,502 to 3,423,527 _RS16510 BWI76_RS16515: BWI76_RS16515 - LysR family transcriptional regulator, at 3,423,546 to 3,424,457 _RS16515 BWI76_RS16520: BWI76_RS16520 - Bcr/CflA family multidrug efflux MFS transporter, at 3,424,569 to 3,425,753 _RS16520 Position (kb) 3423 3424 3425Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3422.765 kb on + strand, within BWI76_RS16510at 3422.766 kb on + strand, within BWI76_RS16510at 3422.766 kb on + strand, within BWI76_RS16510at 3423.615 kb on - strandat 3423.615 kb on - strandat 3423.853 kb on + strand, within BWI76_RS16515at 3424.076 kb on + strand, within BWI76_RS16515at 3424.390 kb on - strandat 3424.511 kb on + strandat 3424.518 kb on - strandat 3424.519 kb on - strandat 3424.519 kb on - strandat 3424.523 kb on + strandat 3424.530 kb on - strandat 3424.934 kb on + strand, within BWI76_RS16520at 3425.036 kb on - strand, within BWI76_RS16520at 3425.116 kb on - strand, within BWI76_RS16520at 3425.209 kb on - strand, within BWI76_RS16520at 3425.305 kb on - strand, within BWI76_RS16520at 3425.341 kb on - strand, within BWI76_RS16520at 3425.439 kb on + strand, within BWI76_RS16520

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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3,422,765 + BWI76_RS16510 0.26 -0.5
3,422,766 + BWI76_RS16510 0.26 +0.3
3,422,766 + BWI76_RS16510 0.26 +0.1
3,423,615 - -3.5
3,423,615 - -1.9
3,423,853 + BWI76_RS16515 0.34 -3.2
3,424,076 + BWI76_RS16515 0.58 -1.7
3,424,390 - -1.4
3,424,511 + -0.8
3,424,518 - -4.5
3,424,519 - -3.3
3,424,519 - -1.7
3,424,523 + -0.4
3,424,530 - -4.0
3,424,934 + BWI76_RS16520 0.31 -3.8
3,425,036 - BWI76_RS16520 0.39 -2.5
3,425,116 - BWI76_RS16520 0.46 -3.4
3,425,209 - BWI76_RS16520 0.54 -2.0
3,425,305 - BWI76_RS16520 0.62 -2.0
3,425,341 - BWI76_RS16520 0.65 -2.4
3,425,439 + BWI76_RS16520 0.73 -2.9

Or see this region's nucleotide sequence