Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005139

Experiment: biofilm; planktonic cells from 96 well plate assay in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_005137 and ABIE53_005138 are separated by 73 nucleotidesABIE53_005138 and ABIE53_005139 are separated by 4 nucleotidesABIE53_005139 and ABIE53_005140 are separated by 35 nucleotidesABIE53_005140 and ABIE53_005141 overlap by 4 nucleotides ABIE53_005137: ABIE53_005137 - putative spermidine/putrescine transport system ATP-binding protein, at 1,390,595 to 1,391,668 _005137 ABIE53_005138: ABIE53_005138 - putative hydrolase of the HAD superfamily, at 1,391,742 to 1,392,452 _005138 ABIE53_005139: ABIE53_005139 - gamma-glutamylputrescine oxidase, at 1,392,457 to 1,393,815 _005139 ABIE53_005140: ABIE53_005140 - putative spermidine/putrescine transport system permease protein, at 1,393,851 to 1,394,723 _005140 ABIE53_005141: ABIE53_005141 - putative spermidine/putrescine transport system permease protein, at 1,394,720 to 1,395,514 _005141 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1391.508 kb on - strand, within ABIE53_005137at 1391.508 kb on - strand, within ABIE53_005137at 1391.692 kb on + strandat 1391.692 kb on + strandat 1391.693 kb on - strandat 1391.693 kb on - strandat 1391.693 kb on - strandat 1391.693 kb on - strandat 1391.882 kb on + strand, within ABIE53_005138at 1391.883 kb on + strand, within ABIE53_005138at 1391.883 kb on + strand, within ABIE53_005138at 1391.883 kb on + strand, within ABIE53_005138at 1391.883 kb on + strand, within ABIE53_005138at 1391.883 kb on + strand, within ABIE53_005138at 1391.883 kb on + strand, within ABIE53_005138at 1391.883 kb on + strand, within ABIE53_005138at 1391.883 kb on + strand, within ABIE53_005138at 1391.884 kb on - strand, within ABIE53_005138at 1391.884 kb on - strand, within ABIE53_005138at 1391.884 kb on - strand, within ABIE53_005138at 1391.884 kb on - strand, within ABIE53_005138at 1391.885 kb on + strand, within ABIE53_005138at 1391.885 kb on + strand, within ABIE53_005138at 1391.886 kb on - strand, within ABIE53_005138at 1391.905 kb on - strand, within ABIE53_005138at 1391.940 kb on + strand, within ABIE53_005138at 1391.941 kb on - strand, within ABIE53_005138at 1391.941 kb on - strand, within ABIE53_005138at 1391.941 kb on - strand, within ABIE53_005138at 1391.941 kb on - strand, within ABIE53_005138at 1391.941 kb on - strand, within ABIE53_005138at 1391.946 kb on + strand, within ABIE53_005138at 1392.205 kb on - strand, within ABIE53_005138at 1392.206 kb on + strand, within ABIE53_005138at 1392.273 kb on + strand, within ABIE53_005138at 1392.450 kb on + strandat 1392.450 kb on + strandat 1392.450 kb on + strandat 1392.509 kb on + strandat 1392.637 kb on + strand, within ABIE53_005139at 1392.638 kb on - strand, within ABIE53_005139at 1392.638 kb on - strand, within ABIE53_005139at 1392.638 kb on - strand, within ABIE53_005139at 1392.638 kb on - strand, within ABIE53_005139at 1392.876 kb on + strand, within ABIE53_005139at 1392.877 kb on - strand, within ABIE53_005139at 1392.964 kb on - strand, within ABIE53_005139at 1392.964 kb on - strand, within ABIE53_005139at 1392.996 kb on - strand, within ABIE53_005139at 1392.996 kb on - strand, within ABIE53_005139at 1393.034 kb on + strand, within ABIE53_005139at 1393.073 kb on - strand, within ABIE53_005139at 1393.078 kb on + strand, within ABIE53_005139at 1393.079 kb on - strand, within ABIE53_005139at 1393.079 kb on - strand, within ABIE53_005139at 1393.079 kb on - strand, within ABIE53_005139at 1393.120 kb on + strand, within ABIE53_005139at 1393.246 kb on + strand, within ABIE53_005139at 1393.372 kb on + strand, within ABIE53_005139at 1393.372 kb on + strand, within ABIE53_005139at 1393.373 kb on - strand, within ABIE53_005139at 1393.373 kb on - strand, within ABIE53_005139at 1393.374 kb on + strand, within ABIE53_005139at 1393.552 kb on + strand, within ABIE53_005139at 1393.624 kb on + strand, within ABIE53_005139at 1393.625 kb on - strand, within ABIE53_005139at 1393.627 kb on - strand, within ABIE53_005139at 1394.049 kb on + strand, within ABIE53_005140at 1394.049 kb on + strand, within ABIE53_005140at 1394.049 kb on + strand, within ABIE53_005140at 1394.050 kb on - strand, within ABIE53_005140at 1394.130 kb on + strand, within ABIE53_005140at 1394.130 kb on + strand, within ABIE53_005140at 1394.131 kb on - strand, within ABIE53_005140at 1394.131 kb on - strand, within ABIE53_005140at 1394.131 kb on - strand, within ABIE53_005140at 1394.170 kb on + strand, within ABIE53_005140at 1394.170 kb on + strand, within ABIE53_005140at 1394.171 kb on - strand, within ABIE53_005140at 1394.186 kb on - strand, within ABIE53_005140at 1394.186 kb on - strand, within ABIE53_005140at 1394.186 kb on - strand, within ABIE53_005140at 1394.186 kb on - strand, within ABIE53_005140at 1394.220 kb on + strand, within ABIE53_005140at 1394.220 kb on + strand, within ABIE53_005140at 1394.220 kb on + strand, within ABIE53_005140at 1394.221 kb on - strand, within ABIE53_005140at 1394.221 kb on - strand, within ABIE53_005140at 1394.221 kb on - strand, within ABIE53_005140at 1394.300 kb on - strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.345 kb on + strand, within ABIE53_005140at 1394.346 kb on - strand, within ABIE53_005140at 1394.346 kb on - strand, within ABIE53_005140at 1394.346 kb on - strand, within ABIE53_005140at 1394.376 kb on + strand, within ABIE53_005140at 1394.377 kb on - strand, within ABIE53_005140at 1394.607 kb on + strand, within ABIE53_005140at 1394.608 kb on - strand, within ABIE53_005140at 1394.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; planktonic cells from 96 well plate assay in R2A
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1,391,508 - ABIE53_005137 0.85 +0.2
1,391,508 - ABIE53_005137 0.85 -0.7
1,391,692 + -0.1
1,391,692 + -0.8
1,391,693 - -0.4
1,391,693 - -0.7
1,391,693 - -1.2
1,391,693 - -0.4
1,391,882 + ABIE53_005138 0.20 +3.0
1,391,883 + ABIE53_005138 0.20 -0.0
1,391,883 + ABIE53_005138 0.20 -0.0
1,391,883 + ABIE53_005138 0.20 +1.0
1,391,883 + ABIE53_005138 0.20 -1.5
1,391,883 + ABIE53_005138 0.20 -1.9
1,391,883 + ABIE53_005138 0.20 -0.9
1,391,883 + ABIE53_005138 0.20 -0.0
1,391,883 + ABIE53_005138 0.20 +0.6
1,391,884 - ABIE53_005138 0.20 +0.2
1,391,884 - ABIE53_005138 0.20 +2.0
1,391,884 - ABIE53_005138 0.20 -1.8
1,391,884 - ABIE53_005138 0.20 +0.1
1,391,885 + ABIE53_005138 0.20 -0.6
1,391,885 + ABIE53_005138 0.20 -0.3
1,391,886 - ABIE53_005138 0.20 +1.0
1,391,905 - ABIE53_005138 0.23 -0.2
1,391,940 + ABIE53_005138 0.28 -1.0
1,391,941 - ABIE53_005138 0.28 +1.5
1,391,941 - ABIE53_005138 0.28 +0.2
1,391,941 - ABIE53_005138 0.28 -1.3
1,391,941 - ABIE53_005138 0.28 -0.1
1,391,941 - ABIE53_005138 0.28 +0.1
1,391,946 + ABIE53_005138 0.29 +0.7
1,392,205 - ABIE53_005138 0.65 -0.8
1,392,206 + ABIE53_005138 0.65 -0.4
1,392,273 + ABIE53_005138 0.75 -0.2
1,392,450 + -0.6
1,392,450 + +0.0
1,392,450 + -1.8
1,392,509 + +0.2
1,392,637 + ABIE53_005139 0.13 +0.9
1,392,638 - ABIE53_005139 0.13 +0.4
1,392,638 - ABIE53_005139 0.13 +0.8
1,392,638 - ABIE53_005139 0.13 -0.1
1,392,638 - ABIE53_005139 0.13 +0.6
1,392,876 + ABIE53_005139 0.31 -0.3
1,392,877 - ABIE53_005139 0.31 +0.9
1,392,964 - ABIE53_005139 0.37 -0.6
1,392,964 - ABIE53_005139 0.37 -2.4
1,392,996 - ABIE53_005139 0.40 +3.0
1,392,996 - ABIE53_005139 0.40 -0.0
1,393,034 + ABIE53_005139 0.42 +0.2
1,393,073 - ABIE53_005139 0.45 -0.8
1,393,078 + ABIE53_005139 0.46 +1.2
1,393,079 - ABIE53_005139 0.46 +0.4
1,393,079 - ABIE53_005139 0.46 -0.3
1,393,079 - ABIE53_005139 0.46 -0.8
1,393,120 + ABIE53_005139 0.49 -2.3
1,393,246 + ABIE53_005139 0.58 -0.6
1,393,372 + ABIE53_005139 0.67 -1.5
1,393,372 + ABIE53_005139 0.67 +1.0
1,393,373 - ABIE53_005139 0.67 -0.2
1,393,373 - ABIE53_005139 0.67 +1.0
1,393,374 + ABIE53_005139 0.67 +1.1
1,393,552 + ABIE53_005139 0.81 -1.7
1,393,624 + ABIE53_005139 0.86 -0.2
1,393,625 - ABIE53_005139 0.86 +0.7
1,393,627 - ABIE53_005139 0.86 -1.6
1,394,049 + ABIE53_005140 0.23 +1.0
1,394,049 + ABIE53_005140 0.23 +1.0
1,394,049 + ABIE53_005140 0.23 +1.1
1,394,050 - ABIE53_005140 0.23 -0.3
1,394,130 + ABIE53_005140 0.32 -0.3
1,394,130 + ABIE53_005140 0.32 -0.4
1,394,131 - ABIE53_005140 0.32 -0.6
1,394,131 - ABIE53_005140 0.32 +0.4
1,394,131 - ABIE53_005140 0.32 -1.3
1,394,170 + ABIE53_005140 0.37 -0.8
1,394,170 + ABIE53_005140 0.37 +0.1
1,394,171 - ABIE53_005140 0.37 +2.0
1,394,186 - ABIE53_005140 0.38 -0.6
1,394,186 - ABIE53_005140 0.38 -1.3
1,394,186 - ABIE53_005140 0.38 +0.3
1,394,186 - ABIE53_005140 0.38 -1.3
1,394,220 + ABIE53_005140 0.42 -1.0
1,394,220 + ABIE53_005140 0.42 -0.3
1,394,220 + ABIE53_005140 0.42 +0.5
1,394,221 - ABIE53_005140 0.42 +2.0
1,394,221 - ABIE53_005140 0.42 -1.6
1,394,221 - ABIE53_005140 0.42 +0.4
1,394,300 - ABIE53_005140 0.51 -1.1
1,394,345 + ABIE53_005140 0.57 +0.3
1,394,345 + ABIE53_005140 0.57 -1.5
1,394,345 + ABIE53_005140 0.57 +0.3
1,394,345 + ABIE53_005140 0.57 +0.6
1,394,345 + ABIE53_005140 0.57 -0.5
1,394,345 + ABIE53_005140 0.57 +0.6
1,394,346 - ABIE53_005140 0.57 +1.4
1,394,346 - ABIE53_005140 0.57 +0.2
1,394,346 - ABIE53_005140 0.57 -1.6
1,394,376 + ABIE53_005140 0.60 +1.2
1,394,377 - ABIE53_005140 0.60 +0.3
1,394,607 + ABIE53_005140 0.87 +0.4
1,394,608 - ABIE53_005140 0.87 +0.4
1,394,673 + +0.1

Or see this region's nucleotide sequence