Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000128

Experiment: biofilm; planktonic cells from 96 well plate assay in R2A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000127 and ABIE53_000128 are separated by 19 nucleotidesABIE53_000128 and ABIE53_000129 are separated by 243 nucleotidesABIE53_000129 and ABIE53_000130 are separated by 49 nucleotides ABIE53_000127: ABIE53_000127 - chemotaxis protein MotB, at 134,034 to 135,041 _000127 ABIE53_000128: ABIE53_000128 - chemotaxis protein MotA, at 135,061 to 135,921 _000128 ABIE53_000129: ABIE53_000129 - flagellar transcriptional activator FlhC, at 136,165 to 136,725 _000129 ABIE53_000130: ABIE53_000130 - flagellar transcriptional activator FlhD, at 136,775 to 137,095 _000130 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 134.360 kb on - strand, within ABIE53_000127at 134.360 kb on - strand, within ABIE53_000127at 134.380 kb on + strand, within ABIE53_000127at 134.381 kb on - strand, within ABIE53_000127at 134.381 kb on - strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.470 kb on + strand, within ABIE53_000127at 134.471 kb on - strand, within ABIE53_000127at 134.774 kb on + strand, within ABIE53_000127at 134.774 kb on + strand, within ABIE53_000127at 134.775 kb on - strand, within ABIE53_000127at 134.775 kb on - strand, within ABIE53_000127at 134.775 kb on - strand, within ABIE53_000127at 134.861 kb on - strand, within ABIE53_000127at 134.861 kb on - strand, within ABIE53_000127at 134.861 kb on - strand, within ABIE53_000127at 134.861 kb on - strand, within ABIE53_000127at 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.062 kb on + strandat 135.063 kb on - strandat 135.063 kb on - strandat 135.063 kb on - strandat 135.063 kb on - strandat 135.167 kb on + strand, within ABIE53_000128at 135.167 kb on + strand, within ABIE53_000128at 135.272 kb on + strand, within ABIE53_000128at 135.272 kb on + strand, within ABIE53_000128at 135.272 kb on + strand, within ABIE53_000128at 135.273 kb on - strand, within ABIE53_000128at 135.536 kb on + strand, within ABIE53_000128at 135.536 kb on + strand, within ABIE53_000128at 135.536 kb on + strand, within ABIE53_000128at 135.536 kb on + strand, within ABIE53_000128at 135.537 kb on - strand, within ABIE53_000128at 135.537 kb on - strand, within ABIE53_000128at 135.537 kb on - strand, within ABIE53_000128at 135.585 kb on - strand, within ABIE53_000128at 135.674 kb on + strand, within ABIE53_000128at 135.674 kb on + strand, within ABIE53_000128at 135.674 kb on + strand, within ABIE53_000128at 135.674 kb on + strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.675 kb on - strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.698 kb on + strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.699 kb on - strand, within ABIE53_000128at 135.713 kb on + strand, within ABIE53_000128at 135.713 kb on + strand, within ABIE53_000128at 135.714 kb on - strand, within ABIE53_000128at 135.714 kb on - strand, within ABIE53_000128at 135.714 kb on - strand, within ABIE53_000128at 135.714 kb on - strand, within ABIE53_000128at 135.787 kb on - strand, within ABIE53_000128at 135.959 kb on + strandat 135.960 kb on - strandat 136.021 kb on + strandat 136.021 kb on + strandat 136.021 kb on + strandat 136.021 kb on + strandat 136.120 kb on + strandat 136.120 kb on + strandat 136.120 kb on + strandat 136.121 kb on - strandat 136.166 kb on + strandat 136.225 kb on - strand, within ABIE53_000129at 136.421 kb on + strand, within ABIE53_000129at 136.422 kb on - strand, within ABIE53_000129at 136.430 kb on + strand, within ABIE53_000129at 136.487 kb on + strand, within ABIE53_000129at 136.488 kb on + strand, within ABIE53_000129at 136.488 kb on - strand, within ABIE53_000129at 136.488 kb on - strand, within ABIE53_000129at 136.488 kb on - strand, within ABIE53_000129at 136.488 kb on - strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.496 kb on + strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.497 kb on - strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.595 kb on + strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.596 kb on - strand, within ABIE53_000129at 136.716 kb on + strandat 136.716 kb on + strandat 136.716 kb on + strandat 136.716 kb on + strandat 136.716 kb on + strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.717 kb on - strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.718 kb on + strandat 136.719 kb on - strandat 136.719 kb on - strandat 136.719 kb on - strandat 136.719 kb on - strandat 136.719 kb on - strandat 136.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; planktonic cells from 96 well plate assay in R2A
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134,360 - ABIE53_000127 0.32 +4.0
134,360 - ABIE53_000127 0.32 +4.3
134,380 + ABIE53_000127 0.34 +6.7
134,381 - ABIE53_000127 0.34 +3.4
134,381 - ABIE53_000127 0.34 +3.3
134,470 + ABIE53_000127 0.43 +4.0
134,470 + ABIE53_000127 0.43 +2.3
134,470 + ABIE53_000127 0.43 +5.9
134,470 + ABIE53_000127 0.43 +5.6
134,470 + ABIE53_000127 0.43 +6.0
134,470 + ABIE53_000127 0.43 +5.5
134,470 + ABIE53_000127 0.43 +6.2
134,470 + ABIE53_000127 0.43 +5.8
134,470 + ABIE53_000127 0.43 +4.7
134,470 + ABIE53_000127 0.43 +4.4
134,470 + ABIE53_000127 0.43 +6.5
134,471 - ABIE53_000127 0.43 +4.4
134,774 + ABIE53_000127 0.73 +5.6
134,774 + ABIE53_000127 0.73 +5.4
134,775 - ABIE53_000127 0.74 +5.3
134,775 - ABIE53_000127 0.74 +3.9
134,775 - ABIE53_000127 0.74 +4.8
134,861 - ABIE53_000127 0.82 +4.4
134,861 - ABIE53_000127 0.82 +7.1
134,861 - ABIE53_000127 0.82 +3.8
134,861 - ABIE53_000127 0.82 +5.7
135,062 + +5.4
135,062 + +5.6
135,062 + +7.2
135,062 + +6.8
135,062 + +6.9
135,062 + +5.6
135,062 + +6.4
135,063 - -1.3
135,063 - -0.5
135,063 - -0.8
135,063 - +3.0
135,167 + ABIE53_000128 0.12 +6.5
135,167 + ABIE53_000128 0.12 +6.3
135,272 + ABIE53_000128 0.25 +5.9
135,272 + ABIE53_000128 0.25 +6.7
135,272 + ABIE53_000128 0.25 +2.7
135,273 - ABIE53_000128 0.25 +5.0
135,536 + ABIE53_000128 0.55 +6.8
135,536 + ABIE53_000128 0.55 +6.9
135,536 + ABIE53_000128 0.55 +5.5
135,536 + ABIE53_000128 0.55 +3.7
135,537 - ABIE53_000128 0.55 +4.8
135,537 - ABIE53_000128 0.55 +4.7
135,537 - ABIE53_000128 0.55 +5.2
135,585 - ABIE53_000128 0.61 +5.3
135,674 + ABIE53_000128 0.71 +5.0
135,674 + ABIE53_000128 0.71 +6.5
135,674 + ABIE53_000128 0.71 +6.5
135,674 + ABIE53_000128 0.71 +5.6
135,675 - ABIE53_000128 0.71 +5.2
135,675 - ABIE53_000128 0.71 +5.8
135,675 - ABIE53_000128 0.71 +4.3
135,675 - ABIE53_000128 0.71 +5.4
135,675 - ABIE53_000128 0.71 +5.7
135,698 + ABIE53_000128 0.74 +6.0
135,698 + ABIE53_000128 0.74 +4.2
135,698 + ABIE53_000128 0.74 +5.9
135,698 + ABIE53_000128 0.74 +7.5
135,698 + ABIE53_000128 0.74 +5.7
135,699 - ABIE53_000128 0.74 +4.6
135,699 - ABIE53_000128 0.74 +5.1
135,699 - ABIE53_000128 0.74 +3.7
135,699 - ABIE53_000128 0.74 +5.7
135,699 - ABIE53_000128 0.74 +3.7
135,699 - ABIE53_000128 0.74 +4.4
135,699 - ABIE53_000128 0.74 +7.5
135,699 - ABIE53_000128 0.74 +4.6
135,699 - ABIE53_000128 0.74 +5.0
135,713 + ABIE53_000128 0.76 +6.2
135,713 + ABIE53_000128 0.76 +6.1
135,714 - ABIE53_000128 0.76 +4.3
135,714 - ABIE53_000128 0.76 +4.6
135,714 - ABIE53_000128 0.76 +4.7
135,714 - ABIE53_000128 0.76 +3.9
135,787 - ABIE53_000128 0.84 +6.3
135,959 + +6.5
135,960 - -2.3
136,021 + +0.6
136,021 + +0.6
136,021 + +0.8
136,021 + +1.3
136,120 + -1.0
136,120 + -0.1
136,120 + +0.1
136,121 - -0.6
136,166 + -0.8
136,225 - ABIE53_000129 0.11 -0.4
136,421 + ABIE53_000129 0.46 -0.1
136,422 - ABIE53_000129 0.46 -1.5
136,430 + ABIE53_000129 0.47 +0.6
136,487 + ABIE53_000129 0.57 -1.9
136,488 + ABIE53_000129 0.58 +0.1
136,488 - ABIE53_000129 0.58 -0.5
136,488 - ABIE53_000129 0.58 +0.7
136,488 - ABIE53_000129 0.58 -1.0
136,488 - ABIE53_000129 0.58 +0.8
136,496 + ABIE53_000129 0.59 +0.1
136,496 + ABIE53_000129 0.59 +1.0
136,496 + ABIE53_000129 0.59 -1.2
136,496 + ABIE53_000129 0.59 +0.0
136,496 + ABIE53_000129 0.59 -0.1
136,496 + ABIE53_000129 0.59 +2.0
136,497 - ABIE53_000129 0.59 -0.3
136,497 - ABIE53_000129 0.59 +1.4
136,497 - ABIE53_000129 0.59 +1.0
136,497 - ABIE53_000129 0.59 -0.7
136,497 - ABIE53_000129 0.59 +0.4
136,595 + ABIE53_000129 0.77 -0.2
136,595 + ABIE53_000129 0.77 +0.4
136,595 + ABIE53_000129 0.77 -0.5
136,595 + ABIE53_000129 0.77 +0.3
136,595 + ABIE53_000129 0.77 -0.1
136,595 + ABIE53_000129 0.77 +0.6
136,595 + ABIE53_000129 0.77 -0.5
136,595 + ABIE53_000129 0.77 -0.1
136,596 - ABIE53_000129 0.77 -0.7
136,596 - ABIE53_000129 0.77 -0.6
136,596 - ABIE53_000129 0.77 +1.0
136,596 - ABIE53_000129 0.77 -0.6
136,596 - ABIE53_000129 0.77 -0.3
136,596 - ABIE53_000129 0.77 +1.0
136,596 - ABIE53_000129 0.77 +0.1
136,716 + -0.9
136,716 + +0.3
136,716 + -0.6
136,716 + -0.9
136,716 + +1.0
136,717 - -0.4
136,717 - -0.2
136,717 - +0.4
136,717 - -0.0
136,717 - -0.7
136,717 - +2.5
136,717 - +0.4
136,717 - +0.0
136,717 - +0.7
136,717 - -0.3
136,717 - -1.6
136,717 - -0.4
136,717 - +0.0
136,717 - -0.5
136,717 - +1.3
136,718 + -0.6
136,718 + +0.2
136,718 + +0.9
136,718 + +0.7
136,718 + -0.8
136,718 + -0.6
136,718 + -0.2
136,719 - +2.0
136,719 - -0.6
136,719 - -0.2
136,719 - -0.1
136,719 - -0.2
136,719 - -0.5

Or see this region's nucleotide sequence