Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4563 and BT4564 are separated by 20 nucleotides BT4564 and BT4565 are separated by 23 nucleotides BT4565 and tRNA-Thr are separated by 491 nucleotides tRNA-Thr and BT4566 are separated by 68 nucleotides
BT4563: BT4563 - hypothetical protein (NCBI ptt file), at 5,983,989 to 5,984,540
BT4563
BT4564: BT4564 - putative glycosyltransferase (NCBI ptt file), at 5,984,561 to 5,985,511
BT4564
BT4565: BT4565 - hypothetical protein (NCBI ptt file), at 5,985,535 to 5,985,909
BT4565
BT_t69: tRNA-Thr - tRNA-Thr (RefSeq), at 5,986,401 to 5,986,474
tRNA-Thr
BT4566: BT4566 - two-component system response regulator protein (NCBI ptt file), at 5,986,543 to 5,987,247
BT4566
Position (kb)
5985
5986 Strain fitness (log2 ratio)
-2
-1
0
1 at 5984.541 kb on - strand at 5985.523 kb on - strand at 5985.962 kb on - strand at 5986.056 kb on - strand at 5986.142 kb on - strand at 5986.225 kb on - strand at 5986.522 kb on + strand at 5986.523 kb on - strand at 5986.587 kb on + strand at 5986.683 kb on - strand, within BT4566 at 5986.744 kb on - strand, within BT4566 at 5986.748 kb on + strand, within BT4566 at 5986.748 kb on + strand, within BT4566 at 5986.749 kb on - strand, within BT4566 at 5986.754 kb on - strand, within BT4566 at 5986.754 kb on - strand, within BT4566
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 5,984,541 - -0.6 5,985,523 - -2.1 5,985,962 - -0.4 5,986,056 - -0.1 5,986,142 - -0.9 5,986,225 - -1.3 5,986,522 + -0.3 5,986,523 - -2.2 5,986,587 + -1.4 5,986,683 - BT4566 0.20 -0.3 5,986,744 - BT4566 0.29 -0.4 5,986,748 + BT4566 0.29 +0.9 5,986,748 + BT4566 0.29 -0.1 5,986,749 - BT4566 0.29 -0.9 5,986,754 - BT4566 0.30 -1.3 5,986,754 - BT4566 0.30 -1.4
Or see this region's nucleotide sequence