Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0019 and SO_A0020 are separated by 33 nucleotides SO_A0020 and SO_A0021 are separated by 32 nucleotides SO_A0021 and higB are separated by 311 nucleotides higB and higA are separated by 74 nucleotides
SOA0019: SOA0019 - ISSod9, DNA-invertase (NCBI ptt file), at 16,733 to 17,290
SOA0019
SO_A0020: SO_A0020 - no description, at 17,324 to 18,154
_A0020
SO_A0021: SO_A0021 - no description, at 18,187 to 18,462
_A0021
SOA0022: higB - proteic killer active protein (NCBI ptt file), at 18,774 to 19,079
higB
SOA0023: higA - proteic killer suppressor protein (NCBI ptt file), at 19,154 to 19,453
higA
Position (kb) 18
19 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 17.320 kb on + strand at 17.327 kb on - strand at 17.370 kb on - strand at 17.370 kb on - strand at 17.375 kb on + strand at 17.414 kb on - strand, within SO_A0020 at 17.414 kb on - strand, within SO_A0020 at 17.419 kb on + strand, within SO_A0020 at 17.426 kb on + strand, within SO_A0020 at 17.471 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.481 kb on + strand, within SO_A0020 at 17.484 kb on - strand, within SO_A0020 at 17.489 kb on - strand, within SO_A0020 at 17.489 kb on - strand, within SO_A0020 at 17.528 kb on + strand, within SO_A0020 at 17.542 kb on - strand, within SO_A0020 at 17.609 kb on - strand, within SO_A0020 at 17.616 kb on + strand, within SO_A0020 at 17.654 kb on - strand, within SO_A0020 at 17.685 kb on - strand, within SO_A0020 at 17.685 kb on - strand, within SO_A0020 at 17.735 kb on - strand, within SO_A0020 at 17.735 kb on - strand, within SO_A0020 at 17.745 kb on - strand, within SO_A0020 at 17.763 kb on - strand, within SO_A0020 at 17.771 kb on - strand, within SO_A0020 at 17.863 kb on + strand, within SO_A0020 at 17.871 kb on - strand, within SO_A0020 at 17.871 kb on - strand, within SO_A0020 at 17.927 kb on - strand, within SO_A0020 at 17.998 kb on + strand, within SO_A0020 at 18.019 kb on - strand, within SO_A0020 at 18.032 kb on + strand, within SO_A0020 at 18.032 kb on + strand, within SO_A0020 at 18.082 kb on + strand at 18.082 kb on + strand at 18.090 kb on - strand at 18.092 kb on + strand at 18.100 kb on - strand at 18.193 kb on - strand at 18.411 kb on - strand, within SO_A0021 at 18.423 kb on - strand, within SO_A0021 at 18.450 kb on + strand at 18.456 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.461 kb on + strand at 18.478 kb on - strand at 18.496 kb on + strand at 18.498 kb on + strand at 18.506 kb on + strand at 18.506 kb on - strand at 18.506 kb on - strand at 18.511 kb on + strand at 18.511 kb on + strand at 18.514 kb on + strand at 18.628 kb on + strand at 18.628 kb on + strand at 18.628 kb on + strand at 18.629 kb on + strand at 18.831 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.837 kb on + strand, within higB at 18.838 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.839 kb on + strand, within higB at 18.847 kb on - strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.854 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.861 kb on + strand, within higB at 18.874 kb on + strand, within higB at 18.878 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.883 kb on + strand, within higB at 18.891 kb on - strand, within higB at 18.891 kb on - strand, within higB at 18.902 kb on + strand, within higB at 18.910 kb on - strand, within higB at 18.910 kb on - strand, within higB at 18.920 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.965 kb on + strand, within higB at 18.973 kb on + strand, within higB at 18.973 kb on - strand, within higB at 19.004 kb on + strand, within higB at 19.024 kb on + strand, within higB at 19.024 kb on + strand, within higB at 19.032 kb on - strand, within higB at 19.057 kb on - strand at 19.070 kb on + strand at 19.070 kb on + strand at 19.078 kb on - strand at 19.103 kb on + strand at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.394 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.412 kb on + strand, within higA at 19.441 kb on + strand at 19.447 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 17,320 + -1.0 17,327 - -2.1 17,370 - -3.1 17,370 - +0.2 17,375 + +0.4 17,414 - SO_A0020 0.11 -1.5 17,414 - SO_A0020 0.11 +1.2 17,419 + SO_A0020 0.11 -0.1 17,426 + SO_A0020 0.12 -1.0 17,471 + SO_A0020 0.18 +1.0 17,481 + SO_A0020 0.19 +1.0 17,481 + SO_A0020 0.19 -0.7 17,481 + SO_A0020 0.19 +0.1 17,481 + SO_A0020 0.19 -0.6 17,481 + SO_A0020 0.19 -0.6 17,481 + SO_A0020 0.19 -0.9 17,484 - SO_A0020 0.19 +1.4 17,489 - SO_A0020 0.20 -0.0 17,489 - SO_A0020 0.20 +0.6 17,528 + SO_A0020 0.25 +0.8 17,542 - SO_A0020 0.26 +1.3 17,609 - SO_A0020 0.34 -0.4 17,616 + SO_A0020 0.35 +4.0 17,654 - SO_A0020 0.40 -0.5 17,685 - SO_A0020 0.43 -0.0 17,685 - SO_A0020 0.43 +1.9 17,735 - SO_A0020 0.49 -0.1 17,735 - SO_A0020 0.49 +0.7 17,745 - SO_A0020 0.51 -0.4 17,763 - SO_A0020 0.53 +1.1 17,771 - SO_A0020 0.54 +0.9 17,863 + SO_A0020 0.65 +0.8 17,871 - SO_A0020 0.66 +1.2 17,871 - SO_A0020 0.66 +0.9 17,927 - SO_A0020 0.73 +0.6 17,998 + SO_A0020 0.81 -2.4 18,019 - SO_A0020 0.84 -2.0 18,032 + SO_A0020 0.85 -0.0 18,032 + SO_A0020 0.85 -2.1 18,082 + +0.8 18,082 + +2.3 18,090 - -2.1 18,092 + -1.6 18,100 - +1.3 18,193 - -0.9 18,411 - SO_A0021 0.81 -3.4 18,423 - SO_A0021 0.86 +2.6 18,450 + -0.2 18,456 + -1.4 18,461 + +1.4 18,461 + +0.2 18,461 + -0.8 18,461 + -0.3 18,478 - -1.6 18,496 + +2.1 18,498 + +0.5 18,506 + -0.6 18,506 - -0.9 18,506 - +0.9 18,511 + -0.4 18,511 + -1.2 18,514 + +1.7 18,628 + -2.3 18,628 + +1.7 18,628 + -2.0 18,629 + -4.4 18,831 + higB SOA0022 0.19 +0.3 18,837 + higB SOA0022 0.21 -1.8 18,837 + higB SOA0022 0.21 -1.8 18,837 + higB SOA0022 0.21 -1.4 18,837 + higB SOA0022 0.21 +1.1 18,837 + higB SOA0022 0.21 +0.6 18,837 + higB SOA0022 0.21 +0.9 18,837 + higB SOA0022 0.21 +1.5 18,837 + higB SOA0022 0.21 +1.1 18,837 + higB SOA0022 0.21 -0.2 18,838 + higB SOA0022 0.21 +0.1 18,839 + higB SOA0022 0.21 +1.2 18,839 + higB SOA0022 0.21 +0.2 18,839 + higB SOA0022 0.21 +1.4 18,847 - higB SOA0022 0.24 -0.4 18,854 + higB SOA0022 0.26 +0.8 18,854 + higB SOA0022 0.26 -0.1 18,854 + higB SOA0022 0.26 +0.4 18,854 + higB SOA0022 0.26 -1.1 18,854 + higB SOA0022 0.26 +0.4 18,861 + higB SOA0022 0.28 -0.3 18,861 + higB SOA0022 0.28 -0.0 18,861 + higB SOA0022 0.28 +3.3 18,861 + higB SOA0022 0.28 +1.7 18,874 + higB SOA0022 0.33 -0.9 18,878 + higB SOA0022 0.34 +0.2 18,883 + higB SOA0022 0.36 -1.9 18,883 + higB SOA0022 0.36 +1.0 18,883 + higB SOA0022 0.36 -0.1 18,883 + higB SOA0022 0.36 +0.4 18,883 + higB SOA0022 0.36 +1.3 18,883 + higB SOA0022 0.36 -0.2 18,883 + higB SOA0022 0.36 +0.1 18,883 + higB SOA0022 0.36 +1.6 18,891 - higB SOA0022 0.38 +0.5 18,891 - higB SOA0022 0.38 -0.6 18,902 + higB SOA0022 0.42 +2.3 18,910 - higB SOA0022 0.44 +0.4 18,910 - higB SOA0022 0.44 +2.6 18,920 + higB SOA0022 0.48 -1.6 18,965 + higB SOA0022 0.62 +0.1 18,965 + higB SOA0022 0.62 -0.2 18,965 + higB SOA0022 0.62 -2.3 18,965 + +2.9 18,965 + higB SOA0022 0.62 +5.6 18,965 + higB SOA0022 0.62 +0.4 18,965 + higB SOA0022 0.62 +0.0 18,965 + higB SOA0022 0.62 -0.6 18,965 + higB SOA0022 0.62 +0.1 18,965 + higB SOA0022 0.62 -1.6 18,965 + higB SOA0022 0.62 +0.8 18,965 + higB SOA0022 0.62 +0.2 18,965 + higB SOA0022 0.62 -2.3 18,965 + higB SOA0022 0.62 +0.1 18,973 + higB SOA0022 0.65 +0.0 18,973 - higB SOA0022 0.65 -2.4 19,004 + higB SOA0022 0.75 +1.2 19,024 + higB SOA0022 0.82 +0.9 19,024 + higB SOA0022 0.82 +0.3 19,032 - higB SOA0022 0.84 -1.5 19,057 - -0.5 19,070 + -0.2 19,070 + -0.1 19,078 - -0.9 19,103 + +2.4 19,394 + higA SOA0023 0.80 -1.1 19,394 + higA SOA0023 0.80 +0.1 19,394 + higA SOA0023 0.80 -3.1 19,394 + higA SOA0023 0.80 -1.9 19,394 + higA SOA0023 0.80 -0.6 19,412 + higA SOA0023 0.86 +0.1 19,412 + higA SOA0023 0.86 +0.9 19,412 + higA SOA0023 0.86 -0.7 19,412 + -0.1 19,412 + higA SOA0023 0.86 -1.8 19,412 + higA SOA0023 0.86 -2.6 19,412 + higA SOA0023 0.86 -2.5 19,412 + higA SOA0023 0.86 -1.9 19,412 + higA SOA0023 0.86 -3.4 19,412 + higA SOA0023 0.86 -3.0 19,441 + -0.8 19,447 + -2.0
Or see this region's nucleotide sequence