Strain Fitness in Shewanella oneidensis MR-1 around SOA0155

Experiment: fumarate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_A0154 and SOA0155 are separated by 21 nucleotidesSOA0155 and SOA0156 are separated by 276 nucleotidesSOA0156 and SOA0157 are separated by 73 nucleotides SO_A0154: SO_A0154 - heavy metal efflux protein, putative (NCBI), at 143,635 to 145,176 _A0154 SOA0155: SOA0155 - conserved domain protein (NCBI ptt file), at 145,198 to 145,458 SOA0155 SOA0156: SOA0156 - hypothetical protein (NCBI ptt file), at 145,735 to 146,208 SOA0156 SOA0157: SOA0157 - hypothetical protein (NCBI ptt file), at 146,282 to 146,737 SOA0157 Position (kb) 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 144.249 kb on - strand, within SO_A0154at 144.303 kb on - strand, within SO_A0154at 144.344 kb on - strand, within SO_A0154at 144.356 kb on + strand, within SO_A0154at 144.442 kb on - strand, within SO_A0154at 144.463 kb on - strand, within SO_A0154at 144.577 kb on - strand, within SO_A0154at 144.583 kb on - strand, within SO_A0154at 144.583 kb on - strand, within SO_A0154at 144.585 kb on + strand, within SO_A0154at 144.593 kb on - strand, within SO_A0154at 144.593 kb on - strand, within SO_A0154at 144.593 kb on - strand, within SO_A0154at 144.593 kb on - strand, within SO_A0154at 144.598 kb on + strand, within SO_A0154at 144.692 kb on + strand, within SO_A0154at 144.707 kb on - strand, within SO_A0154at 144.736 kb on - strand, within SO_A0154at 144.782 kb on + strand, within SO_A0154at 144.789 kb on + strand, within SO_A0154at 144.796 kb on - strand, within SO_A0154at 144.833 kb on - strand, within SO_A0154at 144.843 kb on + strand, within SO_A0154at 144.843 kb on + strand, within SO_A0154at 144.843 kb on + strand, within SO_A0154at 144.843 kb on + strand, within SO_A0154at 144.851 kb on + strand, within SO_A0154at 144.851 kb on - strand, within SO_A0154at 144.866 kb on + strand, within SO_A0154at 144.866 kb on + strand, within SO_A0154at 144.876 kb on + strand, within SO_A0154at 144.887 kb on + strand, within SO_A0154at 144.951 kb on + strand, within SO_A0154at 144.951 kb on + strand, within SO_A0154at 144.958 kb on + strand, within SO_A0154at 144.958 kb on + strand, within SO_A0154at 144.959 kb on - strand, within SO_A0154at 144.959 kb on - strand, within SO_A0154at 144.985 kb on + strand, within SO_A0154at 145.088 kb on + strandat 145.097 kb on - strandat 145.144 kb on - strandat 145.144 kb on - strandat 145.144 kb on - strandat 145.168 kb on - strandat 145.196 kb on + strandat 145.196 kb on + strandat 145.204 kb on - strandat 145.204 kb on - strandat 145.277 kb on + strand, within SOA0155at 145.315 kb on + strand, within SOA0155at 145.318 kb on - strand, within SOA0155at 145.319 kb on - strand, within SOA0155at 145.319 kb on - strand, within SOA0155at 145.369 kb on + strandat 145.377 kb on - strand, within SOA0155at 145.404 kb on + strand, within SOA0155at 145.404 kb on + strand, within SOA0155at 145.404 kb on + strand, within SOA0155at 145.404 kb on + strand, within SOA0155at 145.404 kb on + strand, within SOA0155at 145.404 kb on + strand, within SOA0155at 145.404 kb on + strand, within SOA0155at 145.404 kb on + strand, within SOA0155at 145.412 kb on - strand, within SOA0155at 145.412 kb on - strand, within SOA0155at 145.412 kb on - strand, within SOA0155at 145.412 kb on - strand, within SOA0155at 145.412 kb on - strand, within SOA0155at 145.516 kb on + strandat 145.522 kb on - strandat 145.527 kb on - strandat 145.639 kb on + strandat 145.652 kb on + strandat 145.660 kb on - strandat 145.722 kb on + strandat 145.722 kb on + strandat 145.727 kb on + strandat 145.727 kb on + strandat 145.727 kb on + strandat 145.727 kb on + strandat 145.730 kb on - strandat 145.735 kb on - strandat 145.735 kb on - strandat 145.757 kb on - strandat 145.788 kb on + strandat 145.793 kb on + strand, within SOA0156at 145.808 kb on + strand, within SOA0156at 145.808 kb on - strand, within SOA0156at 145.824 kb on + strand, within SOA0156at 145.827 kb on - strand, within SOA0156at 145.832 kb on - strand, within SOA0156at 145.836 kb on + strand, within SOA0156at 145.837 kb on - strand, within SOA0156at 145.844 kb on - strand, within SOA0156at 145.844 kb on - strand, within SOA0156at 145.916 kb on + strand, within SOA0156at 145.919 kb on - strand, within SOA0156at 145.988 kb on + strand, within SOA0156at 145.988 kb on + strand, within SOA0156at 145.991 kb on - strand, within SOA0156at 145.991 kb on - strand, within SOA0156at 145.991 kb on - strand, within SOA0156at 145.991 kb on - strand, within SOA0156at 146.008 kb on - strand, within SOA0156at 146.043 kb on + strand, within SOA0156at 146.070 kb on - strand, within SOA0156at 146.072 kb on - strand, within SOA0156at 146.074 kb on + strand, within SOA0156at 146.086 kb on + strand, within SOA0156at 146.093 kb on + strand, within SOA0156at 146.094 kb on - strand, within SOA0156at 146.100 kb on + strand, within SOA0156at 146.101 kb on + strand, within SOA0156at 146.101 kb on - strand, within SOA0156at 146.101 kb on - strand, within SOA0156at 146.101 kb on - strand, within SOA0156at 146.115 kb on - strand, within SOA0156at 146.120 kb on + strand, within SOA0156at 146.167 kb on + strandat 146.167 kb on - strandat 146.175 kb on - strandat 146.194 kb on + strandat 146.202 kb on - strandat 146.205 kb on + strandat 146.213 kb on + strandat 146.213 kb on + strandat 146.213 kb on + strandat 146.213 kb on - strandat 146.213 kb on - strandat 146.221 kb on - strandat 146.221 kb on - strandat 146.239 kb on + strandat 146.239 kb on + strandat 146.241 kb on + strandat 146.241 kb on + strandat 146.241 kb on + strandat 146.241 kb on + strandat 146.249 kb on - strandat 146.249 kb on - strandat 146.330 kb on + strand, within SOA0157at 146.331 kb on - strand, within SOA0157at 146.338 kb on + strand, within SOA0157at 146.338 kb on - strand, within SOA0157at 146.346 kb on - strand, within SOA0157at 146.361 kb on - strand, within SOA0157at 146.362 kb on + strand, within SOA0157at 146.374 kb on + strand, within SOA0157at 146.424 kb on + strand, within SOA0157at 146.432 kb on - strand, within SOA0157at 146.432 kb on - strand, within SOA0157

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Per-strain Table

Position Strand Gene LocusTag Fraction fumarate electron acceptor
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144,249 - SO_A0154 0.40 -0.5
144,303 - SO_A0154 0.43 -0.2
144,344 - SO_A0154 0.46 -0.1
144,356 + SO_A0154 0.47 -1.0
144,442 - SO_A0154 0.52 -0.7
144,463 - SO_A0154 0.54 -0.5
144,577 - SO_A0154 0.61 -0.8
144,583 - SO_A0154 0.61 -0.5
144,583 - SO_A0154 0.61 -1.7
144,585 + SO_A0154 0.62 -1.2
144,593 - SO_A0154 0.62 +0.1
144,593 - SO_A0154 0.62 +0.4
144,593 - SO_A0154 0.62 +0.8
144,593 - SO_A0154 0.62 +2.7
144,598 + SO_A0154 0.62 -0.2
144,692 + SO_A0154 0.69 +0.9
144,707 - SO_A0154 0.70 +0.3
144,736 - SO_A0154 0.71 +1.1
144,782 + SO_A0154 0.74 -0.4
144,789 + SO_A0154 0.75 -1.0
144,796 - SO_A0154 0.75 +0.3
144,833 - SO_A0154 0.78 +1.0
144,843 + SO_A0154 0.78 -2.1
144,843 + SO_A0154 0.78 -2.5
144,843 + SO_A0154 0.78 -2.1
144,843 + SO_A0154 0.78 -0.6
144,851 + SO_A0154 0.79 -1.0
144,851 - SO_A0154 0.79 -0.6
144,866 + SO_A0154 0.80 -0.6
144,866 + SO_A0154 0.80 -0.7
144,876 + SO_A0154 0.80 -2.2
144,887 + SO_A0154 0.81 +1.8
144,951 + SO_A0154 0.85 -0.6
144,951 + SO_A0154 0.85 -0.7
144,958 + SO_A0154 0.86 -1.0
144,958 + SO_A0154 0.86 -2.0
144,959 - SO_A0154 0.86 -1.0
144,959 - SO_A0154 0.86 +0.3
144,985 + SO_A0154 0.88 -0.2
145,088 + -0.1
145,097 - +0.2
145,144 - +0.0
145,144 - +1.9
145,144 - -0.6
145,168 - -0.9
145,196 + -1.5
145,196 + -0.7
145,204 - -0.7
145,204 - +3.2
145,277 + SOA0155 0.30 +0.6
145,315 + SOA0155 0.45 +1.0
145,318 - SOA0155 0.46 +0.5
145,319 - SOA0155 0.46 +1.4
145,319 - SOA0155 0.46 +0.3
145,369 + -0.1
145,377 - SOA0155 0.69 +1.7
145,404 + SOA0155 0.79 +1.7
145,404 + SOA0155 0.79 +1.4
145,404 + SOA0155 0.79 +0.5
145,404 + SOA0155 0.79 +0.5
145,404 + SOA0155 0.79 +0.8
145,404 + SOA0155 0.79 +0.6
145,404 + SOA0155 0.79 +1.3
145,404 + SOA0155 0.79 +1.2
145,412 - SOA0155 0.82 +2.0
145,412 - SOA0155 0.82 +3.8
145,412 - SOA0155 0.82 -2.0
145,412 - SOA0155 0.82 -0.5
145,412 - SOA0155 0.82 +0.7
145,516 + +0.4
145,522 - +0.1
145,527 - -0.1
145,639 + -2.3
145,652 + -1.6
145,660 - +1.3
145,722 + -0.3
145,722 + +0.6
145,727 + -1.5
145,727 + +0.6
145,727 + +0.6
145,727 + +1.8
145,730 - -1.2
145,735 - -0.6
145,735 - +0.1
145,757 - +0.8
145,788 + +3.1
145,793 + SOA0156 0.12 -1.7
145,808 + SOA0156 0.15 -2.1
145,808 - SOA0156 0.15 -1.8
145,824 + SOA0156 0.19 -0.6
145,827 - SOA0156 0.19 -0.4
145,832 - SOA0156 0.20 -3.0
145,836 + SOA0156 0.21 -1.8
145,837 - SOA0156 0.22 -2.2
145,844 - SOA0156 0.23 -1.1
145,844 - SOA0156 0.23 -1.5
145,916 + SOA0156 0.38 +0.7
145,919 - SOA0156 0.39 -2.6
145,988 + SOA0156 0.53 +0.9
145,988 + SOA0156 0.53 +0.9
145,991 - SOA0156 0.54 +0.1
145,991 - SOA0156 0.54 -1.2
145,991 - SOA0156 0.54 -0.6
145,991 - SOA0156 0.54 -1.6
146,008 - SOA0156 0.58 +0.8
146,043 + SOA0156 0.65 +0.9
146,070 - SOA0156 0.71 +0.7
146,072 - SOA0156 0.71 +0.8
146,074 + SOA0156 0.72 -0.4
146,086 + SOA0156 0.74 +0.7
146,093 + SOA0156 0.76 -0.5
146,094 - SOA0156 0.76 +0.3
146,100 + SOA0156 0.77 -0.6
146,101 + SOA0156 0.77 +0.0
146,101 - SOA0156 0.77 +0.7
146,101 - SOA0156 0.77 +0.5
146,101 - SOA0156 0.77 -0.4
146,115 - SOA0156 0.80 -0.0
146,120 + SOA0156 0.81 -1.4
146,167 + +0.0
146,167 - +2.1
146,175 - +0.2
146,194 + -0.1
146,202 - -0.9
146,205 + -0.9
146,213 + -1.9
146,213 + -1.3
146,213 + -1.6
146,213 - -1.2
146,213 - -0.8
146,221 - +0.6
146,221 - -1.1
146,239 + +0.4
146,239 + -2.7
146,241 + -0.0
146,241 + -0.6
146,241 + -1.0
146,241 + -0.0
146,249 - -0.1
146,249 - +1.2
146,330 + SOA0157 0.11 +0.4
146,331 - SOA0157 0.11 -0.2
146,338 + SOA0157 0.12 +0.7
146,338 - SOA0157 0.12 +1.9
146,346 - SOA0157 0.14 -0.5
146,361 - SOA0157 0.17 +1.2
146,362 + SOA0157 0.18 -0.1
146,374 + SOA0157 0.20 +1.0
146,424 + SOA0157 0.31 +0.1
146,432 - SOA0157 0.33 -0.1
146,432 - SOA0157 0.33 -1.1

Or see this region's nucleotide sequence