Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0007 and SOA0008 overlap by 11 nucleotides SOA0008 and SO_A0009 are separated by 13 nucleotides SO_A0009 and SOA0010 overlap by 14 nucleotides SOA0010 and SOA0011 are separated by 141 nucleotides
SO_A0007: SO_A0007 - hypothetical protein (NCBI), at 7,113 to 7,850
_A0007
SOA0008: SOA0008 - hypothetical protein (NCBI ptt file), at 7,840 to 8,559
SOA0008
SO_A0009: SO_A0009 - hypothetical protein (NCBI), at 8,573 to 8,818
_A0009
SOA0010: SOA0010 - conserved hypothetical protein (NCBI ptt file), at 8,805 to 9,323
SOA0010
SOA0011: SOA0011 - conserved hypothetical protein (NCBI ptt file), at 9,465 to 9,707
SOA0011
Position (kb) 7
8
9 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 6.939 kb on + strand at 7.004 kb on + strand at 7.004 kb on + strand at 7.004 kb on + strand at 7.012 kb on - strand at 7.035 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.036 kb on + strand at 7.038 kb on + strand at 7.043 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.044 kb on - strand at 7.206 kb on + strand, within SO_A0007 at 7.207 kb on + strand, within SO_A0007 at 7.215 kb on - strand, within SO_A0007 at 7.215 kb on - strand, within SO_A0007 at 7.303 kb on - strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.366 kb on + strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.374 kb on - strand, within SO_A0007 at 7.411 kb on - strand, within SO_A0007 at 7.439 kb on + strand, within SO_A0007 at 7.447 kb on - strand, within SO_A0007 at 7.943 kb on + strand, within SOA0008 at 7.951 kb on - strand, within SOA0008 at 7.974 kb on + strand, within SOA0008 at 7.974 kb on + strand, within SOA0008 at 7.976 kb on - strand, within SOA0008 at 7.982 kb on - strand, within SOA0008 at 8.002 kb on + strand, within SOA0008 at 8.010 kb on - strand, within SOA0008 at 8.055 kb on + strand, within SOA0008 at 8.061 kb on - strand, within SOA0008 at 8.061 kb on - strand, within SOA0008 at 8.118 kb on - strand, within SOA0008 at 8.174 kb on - strand, within SOA0008 at 8.313 kb on + strand, within SOA0008 at 8.321 kb on - strand, within SOA0008 at 8.326 kb on - strand, within SOA0008 at 8.365 kb on + strand, within SOA0008 at 8.417 kb on + strand, within SOA0008 at 8.437 kb on + strand, within SOA0008 at 8.683 kb on - strand, within SO_A0009 at 8.683 kb on - strand, within SO_A0009 at 8.706 kb on - strand, within SO_A0009 at 8.742 kb on + strand, within SO_A0009 at 8.742 kb on + strand, within SO_A0009 at 8.826 kb on - strand at 8.877 kb on + strand, within SOA0010 at 8.913 kb on - strand, within SOA0010 at 8.939 kb on + strand, within SOA0010 at 8.978 kb on + strand, within SOA0010 at 9.184 kb on + strand, within SOA0010 at 9.504 kb on + strand, within SOA0011
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 6,939 + +5.6 7,004 + +4.0 7,004 + -1.4 7,004 + +4.0 7,012 - +0.1 7,035 + +3.6 7,036 + +2.9 7,036 + +8.2 7,036 + +3.2 7,036 + +2.1 7,036 + +4.1 7,036 + +4.2 7,036 + +1.4 7,036 + +3.8 7,036 + +3.5 7,036 + +2.3 7,036 + +3.3 7,036 + +2.9 7,036 + +4.1 7,036 + +4.1 7,036 + +3.4 7,036 + +3.8 7,036 + +3.0 7,038 + +2.0 7,043 - +3.9 7,044 - +3.3 7,044 - +6.4 7,044 - +4.4 7,044 - +2.1 7,044 - +3.1 7,044 - -0.4 7,044 - +5.1 7,044 - +2.7 7,044 - +4.6 7,044 - +2.9 7,044 - +3.2 7,044 - +4.2 7,044 - +5.3 7,044 - +8.2 7,044 - +3.8 7,044 - +0.4 7,044 - +4.0 7,044 - +3.5 7,044 - +0.9 7,044 - -0.1 7,206 + SO_A0007 0.13 +3.3 7,207 + SO_A0007 0.13 +2.8 7,215 - SO_A0007 0.14 +4.2 7,215 - SO_A0007 0.14 +3.4 7,303 - SO_A0007 0.26 +4.1 7,366 + SO_A0007 0.34 +5.9 7,366 + SO_A0007 0.34 +2.9 7,366 + SO_A0007 0.34 +7.0 7,366 + SO_A0007 0.34 +3.0 7,366 + SO_A0007 0.34 +3.3 7,366 + SO_A0007 0.34 +1.4 7,366 + SO_A0007 0.34 +2.7 7,374 - SO_A0007 0.35 +5.4 7,374 - SO_A0007 0.35 +3.6 7,374 - SO_A0007 0.35 +3.5 7,374 - SO_A0007 0.35 +2.0 7,374 - SO_A0007 0.35 +3.7 7,374 - SO_A0007 0.35 +3.7 7,374 - SO_A0007 0.35 +5.5 7,411 - SO_A0007 0.40 +4.6 7,439 + SO_A0007 0.44 +0.4 7,447 - SO_A0007 0.45 +2.4 7,943 + SOA0008 0.14 +3.8 7,951 - SOA0008 0.15 +5.0 7,974 + SOA0008 0.19 +4.6 7,974 + SOA0008 0.19 +3.9 7,976 - SOA0008 0.19 +2.7 7,982 - SOA0008 0.20 +3.8 8,002 + SOA0008 0.23 +3.4 8,010 - SOA0008 0.24 +5.1 8,055 + SOA0008 0.30 +3.2 8,061 - SOA0008 0.31 +3.8 8,061 - SOA0008 0.31 +3.7 8,118 - SOA0008 0.39 +4.4 8,174 - SOA0008 0.46 +4.8 8,313 + SOA0008 0.66 +6.0 8,321 - SOA0008 0.67 +4.5 8,326 - SOA0008 0.68 +3.5 8,365 + SOA0008 0.73 +3.8 8,417 + SOA0008 0.80 +4.1 8,437 + SOA0008 0.83 +3.2 8,683 - SO_A0009 0.45 +4.7 8,683 - SO_A0009 0.45 +3.5 8,706 - SO_A0009 0.54 +2.8 8,742 + SO_A0009 0.69 +3.4 8,742 + SO_A0009 0.69 +3.5 8,826 - +3.7 8,877 + SOA0010 0.14 +3.2 8,913 - SOA0010 0.21 +3.5 8,939 + SOA0010 0.26 +4.4 8,978 + SOA0010 0.33 +3.3 9,184 + SOA0010 0.73 +3.0 9,504 + SOA0011 0.16 +2.4
Or see this region's nucleotide sequence