Strain Fitness in Shewanella oneidensis MR-1 around SO4342

Experiment: fumarate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	fumarate electron acceptor
4,533,088	-		SO4341	0.52	+1.2
4,533,095	+		SO4341	0.52	+1.5
4,533,095	+		SO4341	0.52	+1.9
4,533,095	+		SO4341	0.52	-1.0
4,533,095	+		SO4341	0.52	-1.7
4,533,095	+		SO4341	0.52	-1.0
4,533,095	-		SO4341	0.52	-1.7
4,533,103	-		SO4341	0.53	-1.8
4,533,103	-		SO4341	0.53	+1.5
4,533,103	-		SO4341	0.53	+0.4
4,533,103	-		SO4341	0.53	+0.2
4,533,103	-		SO4341	0.53	+1.0
4,533,103	-		SO4341	0.53	-0.2
4,533,103	-		SO4341	0.53	+0.2
4,533,103	-		SO4341	0.53	-0.8
4,533,110	-		SO4341	0.54	+1.1
4,533,139	+		SO4341	0.57	+0.4
4,533,140	+		SO4341	0.57	-0.5
4,533,147	-		SO4341	0.58	+0.2
4,533,155	-		SO4341	0.59	-0.9
4,533,158	+		SO4341	0.59	+0.6
4,533,160	+		SO4341	0.60	+0.3
4,533,165	+		SO4341	0.60	+0.7
4,533,165	+		SO4341	0.60	-2.1
4,533,165	+		SO4341	0.60	-2.4
4,533,165	+		SO4341	0.60	-2.8
4,533,165	+		SO4341	0.60	+1.1
4,533,165	+		SO4341	0.60	-2.9
4,533,165	+		SO4341	0.60	+1.6
4,533,165	+		SO4341	0.60	+0.9
4,533,173	-		SO4341	0.61	-0.7
4,533,173	-		SO4341	0.61	+0.6
4,533,173	-		SO4341	0.61	-0.2
4,533,173	-		SO4341	0.61	+3.6
4,533,173	-		SO4341	0.61	+0.5
4,533,173	-		SO4341	0.61	-2.8
4,533,173	-		SO4341	0.61	-0.7
4,533,173	-		SO4341	0.61	-0.5
4,533,173	-		SO4341	0.61	+0.7
4,533,173	-		SO4341	0.61	-0.6
4,533,173	-		SO4341	0.61	+1.0
4,533,176	-		SO4341	0.61	+1.2
4,533,182	+		SO4341	0.62	-0.6
4,533,196	-		SO4341	0.64	-0.1
4,533,214	-		SO4341	0.66	-1.0
4,533,220	+		SO4341	0.66	-1.5
4,533,228	-		SO4341	0.67	-1.2
4,533,295	+		SO4341	0.74	-2.2
4,533,296	+		SO4341	0.75	+1.0
4,533,305	-		SO4341	0.76	-0.2
4,533,305	-		SO4341	0.76	-0.0
4,533,313	-		SO4341	0.76	+0.9
4,533,326	+		SO4341	0.78	-0.2
4,533,341	+		SO4341	0.80	-0.7
4,533,341	+		SO4341	0.80	-0.0
4,533,341	+		SO4341	0.80	+0.1
4,533,341	+		SO4341	0.80	-1.7
4,533,341	+		SO4341	0.80	+1.0
4,533,341	+		SO4341	0.80	-1.5
4,533,341	+		SO4341	0.80	+0.6
4,533,341	+		SO4341	0.80	+0.1
4,533,341	+		SO4341	0.80	-0.4
4,533,341	+		SO4341	0.80	-0.2
4,533,341	+		SO4341	0.80	+1.8
4,533,341	+		SO4341	0.80	+0.9
4,533,341	+		SO4341	0.80	-0.6
4,533,341	+		SO4341	0.80	+2.5
4,533,343	+		SO4341	0.80	-0.5
4,533,349	-		SO4341	0.80	+1.1
4,533,349	-		SO4341	0.80	-1.2
4,533,349	-		SO4341	0.80	+0.7
4,533,349	-		SO4341	0.80	+0.5
4,533,349	-		SO4341	0.80	+0.7
4,533,349	-		SO4341	0.80	-0.3
4,533,349	-		SO4341	0.80	+0.8
4,533,351	-		SO4341	0.81	+1.6
4,533,355	+		SO4341	0.81	-1.1
4,533,363	-		SO4341	0.82	+0.3
4,533,363	-		SO4341	0.82	+1.0
4,533,365	+		SO4341	0.82	-0.2
4,533,365	+		SO4341	0.82	+1.1
4,533,365	+		SO4341	0.82	-2.2
4,533,365	+		SO4341	0.82	+0.5
4,533,368	-		SO4341	0.83	+1.4
4,533,373	-		SO4341	0.83	+0.5
4,533,380	+		SO4341	0.84	-1.9
4,533,388	-		SO4341	0.85	+1.5
4,533,436	+				+0.8
4,533,436	+				-2.0
4,533,436	+				+0.2
4,533,436	+				-1.6
4,533,436	+				+0.4
4,533,436	+				-1.1
4,533,436	+				-0.8
4,533,436	+				+0.8
4,533,444	-				-1.6
4,533,444	-				-1.4
4,533,444	-				+1.9
4,533,444	-				-0.9
4,533,444	-				-1.2
4,533,444	-				-0.3
4,533,444	-				-2.2
4,533,444	-				-0.4
4,533,444	-				+1.5
4,533,448	+				-1.1
4,533,448	+				+3.1
4,533,448	+				-0.9
4,533,456	-				+2.6
4,533,486	+				-1.3
4,533,508	-				+0.2
4,533,511	+				+0.9
4,533,519	-				+1.9
4,533,519	-				-1.4
4,533,519	-				+5.0
4,533,527	+				-2.0
4,533,527	+				+0.0
4,533,540	-				+0.3
4,533,549	-				-2.4
4,533,549	-				+0.9
4,533,550	+				-1.1
4,533,550	+				-1.6
4,533,550	-				-0.7
4,533,554	-				+1.0
4,533,557	+				+1.3
4,533,557	+				-0.6
4,533,557	+				-2.0
4,533,557	-				-0.1
4,533,558	-				-3.6
4,533,558	-				+0.8
4,533,558	-				+0.3
4,533,558	-				-0.7
4,533,558	-				+0.4
4,533,562	+				-2.4
4,533,563	-				+1.1
4,533,564	+				+0.2
4,533,564	+				-0.2
4,533,564	+				+0.0
4,533,564	+				-2.4
4,533,564	+				-3.2
4,533,564	+				+1.2
4,533,564	+				+0.2
4,533,564	+				+1.3
4,533,564	+				+0.9
4,533,570	-				-1.7
4,533,572	+				-2.0
4,533,572	-				-2.3
4,533,572	-				-0.3
4,533,572	-				+2.4
4,533,572	-				-0.2
4,533,572	-				-4.0
4,533,572	-				+1.0
4,533,572	-				-0.7
4,533,572	-				-1.7
4,533,574	+				-1.4
4,533,574	+				-3.4
4,533,574	-				+3.2
4,533,581	+				+0.1
4,533,581	+				+2.3
4,533,581	+				+0.1
4,533,581	+				+0.1
4,533,581	+				-1.2
4,533,581	+				+1.0
4,533,581	+				-1.1
4,533,581	+				-0.4
4,533,582	-				-1.6
4,533,589	-				-1.1
4,533,589	-				+0.2
4,533,589	-				-3.9
4,533,589	-				-0.0
4,533,589	-				+1.6
4,533,589	-				+1.0
4,533,589	-				+0.7
4,533,589	-				+1.1
4,533,589	-				+0.3
4,533,589	-				-0.5
4,533,589	-				-0.1
4,533,589	-				+2.1
4,533,589	-				-0.8
4,533,589	-				-0.7
4,533,591	+				-0.1
4,533,594	-				+0.4
4,533,621	+				+1.8
4,533,629	-				+1.2
4,533,629	-				+1.4
4,533,629	-				-1.2
4,533,630	+				-2.1
4,533,801	+				+0.5
4,533,891	+				-1.7
4,533,966	-				-0.0
4,533,966	-				+1.7
4,534,097	+				+1.2
4,534,105	-				-0.6
4,534,105	-				+0.7
4,534,140	-		SO4342	0.18	+2.7
4,534,142	+		SO4342	0.18	+0.2
4,534,186	+		SO4342	0.33	+0.6
4,534,278	-		SO4342	0.65	-1.8
4,534,316	+		SO4342	0.78	+1.1
4,534,394	-				-1.7
4,534,397	+				+1.1
4,534,397	+				+1.1
4,534,397	+				-0.6
4,534,405	-				-0.6
4,534,405	-				+0.5
4,534,405	-				-0.4
4,534,414	-				-0.5
4,534,517	-		SO4343	0.12	-4.6
4,534,555	-		SO4343	0.15	-1.5
4,534,573	+		SO4343	0.17	-0.3
4,534,581	-		SO4343	0.17	-2.5
4,534,590	+		SO4343	0.18	-0.1
4,534,598	-		SO4343	0.19	-0.1
4,534,654	-		SO4343	0.24	+1.1
4,534,726	+		SO4343	0.30	-1.5
4,534,754	+		SO4343	0.33	-0.5
4,534,754	+		SO4343	0.33	-1.4
4,534,767	-		SO4343	0.34	-2.0
4,534,782	+		SO4343	0.35	+0.9
4,534,902	+		SO4343	0.46	+0.7
4,534,902	+		SO4343	0.46	+0.7
4,534,918	-		SO4343	0.47	-1.9
4,534,949	-		SO4343	0.50	-1.2
4,534,954	+		SO4343	0.50	+0.6
4,534,954	+		SO4343	0.50	+1.8
4,534,962	-		SO4343	0.51	+0.3
4,534,977	-		SO4343	0.52	-1.1
4,535,067	-		SO4343	0.60	+0.3
4,535,152	-		SO4343	0.68	+1.9