Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO2940 and SO2941 are separated by 4 nucleotides SO2941 and SO2942 are separated by 76 nucleotides SO2942 and SO2943 are separated by 77 nucleotides SO2943 and SO2944 are separated by 67 nucleotides
SO2940: SO2940 - prophage LambdaSo, host specificity protein J, putative (NCBI ptt file), at 3,076,443 to 3,080,468
SO2940
SO2941: SO2941 - prophage LambdaSo, tail assembly protein I (NCBI ptt file), at 3,080,473 to 3,081,102
SO2941
SO2942: SO2942 - hypothetical protein (NCBI ptt file), at 3,081,179 to 3,081,745
SO2942
SO2943: SO2943 - conserved domain protein (NCBI ptt file), at 3,081,823 to 3,082,080
SO2943
SO2944: SO2944 - hypothetical protein (NCBI ptt file), at 3,082,148 to 3,083,743
SO2944
Position (kb)
3081
3082 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3080.271 kb on + strand at 3080.315 kb on - strand at 3080.357 kb on - strand at 3080.657 kb on + strand, within SO2941 at 3080.664 kb on - strand, within SO2941 at 3080.665 kb on + strand, within SO2941 at 3080.673 kb on - strand, within SO2941 at 3080.713 kb on + strand, within SO2941 at 3080.713 kb on + strand, within SO2941 at 3080.734 kb on + strand, within SO2941 at 3080.749 kb on + strand, within SO2941 at 3080.750 kb on + strand, within SO2941 at 3080.767 kb on - strand, within SO2941 at 3080.799 kb on - strand, within SO2941 at 3080.891 kb on - strand, within SO2941 at 3081.054 kb on + strand at 3081.087 kb on + strand at 3081.098 kb on + strand at 3081.106 kb on - strand at 3081.205 kb on + strand at 3081.223 kb on + strand at 3081.237 kb on + strand, within SO2942 at 3081.259 kb on + strand, within SO2942 at 3081.271 kb on + strand, within SO2942 at 3081.279 kb on - strand, within SO2942 at 3081.393 kb on + strand, within SO2942 at 3081.667 kb on + strand, within SO2942 at 3081.667 kb on + strand, within SO2942 at 3081.779 kb on + strand at 3081.793 kb on + strand at 3081.793 kb on + strand at 3081.843 kb on - strand at 3081.859 kb on - strand, within SO2943 at 3081.916 kb on + strand, within SO2943 at 3081.948 kb on + strand, within SO2943 at 3082.040 kb on - strand, within SO2943 at 3082.056 kb on + strand at 3082.062 kb on + strand at 3082.129 kb on + strand at 3082.129 kb on + strand at 3082.129 kb on + strand at 3082.129 kb on + strand at 3082.137 kb on - strand at 3082.137 kb on - strand at 3082.137 kb on - strand at 3082.187 kb on - strand at 3082.311 kb on - strand, within SO2944 at 3082.353 kb on - strand, within SO2944 at 3082.369 kb on - strand, within SO2944 at 3082.376 kb on - strand, within SO2944 at 3082.447 kb on + strand, within SO2944 at 3082.506 kb on - strand, within SO2944 at 3082.514 kb on + strand, within SO2944 at 3082.565 kb on - strand, within SO2944 at 3082.565 kb on - strand, within SO2944 at 3082.607 kb on + strand, within SO2944 at 3082.613 kb on - strand, within SO2944 at 3082.615 kb on - strand, within SO2944 at 3082.623 kb on - strand, within SO2944 at 3082.687 kb on + strand, within SO2944 at 3082.695 kb on - strand, within SO2944 at 3082.716 kb on - strand, within SO2944 at 3082.716 kb on - strand, within SO2944 at 3082.716 kb on - strand, within SO2944 at 3082.736 kb on + strand, within SO2944
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 3,080,271 + +0.8 3,080,315 - +1.5 3,080,357 - +1.2 3,080,657 + SO2941 0.29 +0.3 3,080,664 - SO2941 0.30 -1.3 3,080,665 + SO2941 0.30 +0.9 3,080,673 - SO2941 0.32 +0.5 3,080,713 + SO2941 0.38 -0.7 3,080,713 + SO2941 0.38 +1.0 3,080,734 + SO2941 0.41 -1.3 3,080,749 + SO2941 0.44 +1.5 3,080,750 + SO2941 0.44 -1.4 3,080,767 - SO2941 0.47 +1.2 3,080,799 - SO2941 0.52 -0.1 3,080,891 - SO2941 0.66 -0.5 3,081,054 + +1.6 3,081,087 + +0.7 3,081,098 + +0.6 3,081,106 - +0.2 3,081,205 + -1.5 3,081,223 + +1.2 3,081,237 + SO2942 0.10 +2.0 3,081,259 + SO2942 0.14 +0.0 3,081,271 + SO2942 0.16 +1.4 3,081,279 - SO2942 0.18 +1.6 3,081,393 + SO2942 0.38 +1.1 3,081,667 + SO2942 0.86 +1.6 3,081,667 + SO2942 0.86 +1.9 3,081,779 + +1.3 3,081,793 + +1.3 3,081,793 + +2.1 3,081,843 - +0.1 3,081,859 - SO2943 0.14 +0.6 3,081,916 + SO2943 0.36 -2.4 3,081,948 + SO2943 0.48 +1.5 3,082,040 - SO2943 0.84 +1.8 3,082,056 + -3.0 3,082,062 + +0.8 3,082,129 + +0.5 3,082,129 + +1.6 3,082,129 + +1.2 3,082,129 + +0.9 3,082,137 - +0.0 3,082,137 - -2.3 3,082,137 - -1.5 3,082,187 - +1.5 3,082,311 - SO2944 0.10 -0.4 3,082,353 - SO2944 0.13 -1.5 3,082,369 - SO2944 0.14 -0.4 3,082,376 - SO2944 0.14 -1.6 3,082,447 + SO2944 0.19 +0.1 3,082,506 - SO2944 0.22 +2.2 3,082,514 + SO2944 0.23 +0.8 3,082,565 - SO2944 0.26 +1.3 3,082,565 - SO2944 0.26 +1.1 3,082,607 + SO2944 0.29 -0.7 3,082,613 - SO2944 0.29 +1.4 3,082,615 - SO2944 0.29 -0.3 3,082,623 - SO2944 0.30 -0.8 3,082,687 + SO2944 0.34 -1.2 3,082,695 - SO2944 0.34 +1.1 3,082,716 - SO2944 0.36 +0.2 3,082,716 - SO2944 0.36 +1.0 3,082,716 - SO2944 0.36 +1.8 3,082,736 + SO2944 0.37 +1.8
Or see this region's nucleotide sequence