Strain Fitness in Shewanella oneidensis MR-1 around SO1417

Experiment: fumarate electron acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	fumarate electron acceptor
1,472,798	+				-2.1
1,472,834	-				+1.1
1,472,879	+				+0.8
1,472,916	-				+0.5
1,473,186	-				+0.1
1,473,225	+				-3.0
1,473,271	+		SO1416	0.11	+1.6
1,473,289	-		SO1416	0.14	+0.4
1,473,379	+		SO1416	0.29	+0.5
1,473,379	+		SO1416	0.29	-3.0
1,473,385	+		SO1416	0.30	+0.9
1,473,387	-		SO1416	0.31	+1.5
1,473,387	-		SO1416	0.31	+0.9
1,473,387	-		SO1416	0.31	-0.7
1,473,452	-		SO1416	0.41	-1.0
1,473,521	+		SO1416	0.53	+1.6
1,473,531	-		SO1416	0.55	+0.6
1,473,533	+		SO1416	0.55	-0.6
1,473,533	+		SO1416	0.55	-0.0
1,473,541	-		SO1416	0.56	-0.1
1,473,663	-		SO1416	0.77	-0.5
1,473,707	+		SO1416	0.84	+0.5
1,473,707	+		SO1416	0.84	-0.0
1,473,707	+		SO1416	0.84	+0.0
1,473,707	+		SO1416	0.84	+0.3
1,473,715	-		SO1416	0.85	+1.2
1,473,715	-		SO1416	0.85	+1.0
1,473,715	-		SO1416	0.85	-3.6
1,473,715	-		SO1416	0.85	-0.5
1,473,722	+		SO1416	0.86	-0.3
1,473,730	-		SO1416	0.88	-1.1
1,473,730	-		SO1416	0.88	+0.4
1,473,760	-				-0.4
1,473,809	+				+1.9
1,473,819	-				-1.4
1,473,829	-				-2.8
1,473,860	-				-0.8
1,473,935	-				-0.7
1,473,935	-				-0.1
1,473,947	+				-1.5
1,473,978	+		SO1417	0.11	-1.0
1,474,175	+		SO1417	0.22	-0.5
1,474,300	-		SO1417	0.29	-3.6
1,474,432	-		SO1417	0.36	-1.2
1,474,548	+		SO1417	0.43	-2.2
1,474,593	-		SO1417	0.45	-1.7
1,474,600	+		SO1417	0.46	-0.2
1,474,636	+		SO1417	0.48	-0.2
1,474,649	-		SO1417	0.48	-2.3
1,474,649	-		SO1417	0.48	-1.8
1,474,649	-		SO1417	0.48	-0.1
1,474,710	+		SO1417	0.52	-3.5
1,474,799	+		SO1417	0.57	-2.0
1,474,874	-		SO1417	0.61	+1.2
1,474,875	+		SO1417	0.61	-1.3
1,474,888	-		SO1417	0.62	+0.7
1,474,898	-		SO1417	0.62	-0.9
1,474,952	+		SO1417	0.65	+0.4
1,475,057	+		SO1417	0.71	+0.2
1,475,058	+		SO1417	0.71	-0.7
1,475,065	-		SO1417	0.71	-1.6
1,475,077	+		SO1417	0.72	+0.7
1,475,169	-		SO1417	0.77	-0.1
1,475,211	+		SO1417	0.79	-1.0
1,475,218	+		SO1417	0.80	-1.6
1,475,224	-		SO1417	0.80	+0.4
1,475,226	-		SO1417	0.80	+0.7
1,475,226	-		SO1417	0.80	+0.1
1,475,226	-		SO1417	0.80	+0.9
1,475,236	-		SO1417	0.81	+0.7
1,475,236	-		SO1417	0.81	+0.4
1,475,252	+		SO1417	0.82	-0.1
1,475,317	-		SO1417	0.85	+0.7
1,475,387	+		SO1417	0.89	+0.1
1,475,390	-		SO1417	0.89	-2.8
1,475,395	-		SO1417	0.90	+0.4
1,475,395	-		SO1417	0.90	-1.2
1,475,395	-		SO1417	0.90	+1.7
1,475,395	-		SO1417	0.90	+0.2
1,475,395	-		SO1417	0.90	-1.3
1,475,395	-		SO1417	0.90	+1.4
1,475,430	-				+0.2
1,475,430	-				-1.1
1,475,526	+				-0.4
1,475,564	-				-0.5
1,475,584	+				-1.0
1,475,584	+				+0.5
1,475,584	+				+0.3
1,475,584	+				-1.3
1,475,592	-				-1.3
1,475,592	-				+1.7
1,475,592	-				-0.1
1,475,592	-				-0.5
1,475,592	-				-0.6
1,475,616	+				-1.0
1,475,616	+				-1.8
1,475,616	+				+1.7
1,475,626	+				+1.0
1,475,634	-				-0.6
1,475,653	+				+0.2
1,475,661	-				-0.2
1,475,661	-				+0.7
1,475,661	-				+0.3
1,475,661	-				-0.4
1,475,662	-				+1.1
1,475,662	-				-0.4
1,475,730	+				-0.0
1,475,743	+				-3.1
1,475,748	-				-1.3
1,475,752	+				-3.1
1,475,759	+				+0.3
1,475,759	+				-2.1
1,475,759	+				-1.2
1,475,759	+				+0.8
1,475,759	+				-1.2
1,475,759	+				-0.3
1,475,767	-				-1.8
1,475,767	-				+1.9
1,475,767	-				+0.9
1,475,767	-				-4.0
1,475,767	-				-0.5
1,475,767	-				-0.6
1,475,769	-				+0.1
1,475,779	-				+1.9
1,475,811	-				-0.4
1,475,835	+				+0.1
1,475,846	+				-0.1
1,475,905	+		SO1418	0.13	-0.8
1,475,924	+		SO1418	0.15	+0.4
1,475,924	+		SO1418	0.15	-0.8
1,475,924	+		SO1418	0.15	-2.1
1,475,924	+		SO1418	0.15	-1.2
1,475,924	+		SO1418	0.15	+1.6
1,475,924	+		SO1418	0.15	-1.6
1,475,924	+		SO1418	0.15	-0.7
1,475,924	+		SO1418	0.15	+1.3
1,475,924	+		SO1418	0.15	-1.1
1,475,932	-		SO1418	0.16	-1.9
1,475,932	-		SO1418	0.16	+0.1
1,475,932	-		SO1418	0.16	+0.3
1,475,956	+		SO1418	0.18	+1.3
1,475,957	-		SO1418	0.18	-0.8
1,475,994	-		SO1418	0.21	-0.7
1,476,004	+		SO1418	0.22	+0.9
1,476,004	+		SO1418	0.22	-0.1
1,476,010	+		SO1418	0.23	-2.9
1,476,012	-		SO1418	0.23	+0.6
1,476,012	-		SO1418	0.23	+1.1
1,476,012	-		SO1418	0.23	+1.4
1,476,012	-		SO1418	0.23	+0.3
1,476,012	-		SO1418	0.23	+0.7
1,476,018	-		SO1418	0.23	-0.1
1,476,018	-		SO1418	0.23	-0.2
1,476,036	+		SO1418	0.25	-0.2
1,476,048	+		SO1418	0.26	-0.7
1,476,068	+		SO1418	0.28	+1.4
1,476,179	+		SO1418	0.38	+1.3
1,476,179	+		SO1418	0.38	-2.9
1,476,179	+		SO1418	0.38	+1.9
1,476,179	+		SO1418	0.38	-1.3
1,476,179	+		SO1418	0.38	-1.7
1,476,180	+		SO1418	0.38	-2.3
1,476,181	+		SO1418	0.38	-0.3
1,476,181	+		SO1418	0.38	+0.1
1,476,187	-		SO1418	0.38	+1.6
1,476,187	-		SO1418	0.38	+0.7
1,476,187	-		SO1418	0.38	-0.1
1,476,187	-		SO1418	0.38	-1.5
1,476,188	-		SO1418	0.38	+1.3
1,476,189	+		SO1418	0.38	-0.3
1,476,199	-		SO1418	0.39	-1.6
1,476,199	-		SO1418	0.39	-4.1
1,476,234	+		SO1418	0.42	+1.9
1,476,248	+		SO1418	0.44	+0.1
1,476,259	+		SO1418	0.45	+0.9
1,476,267	-		SO1418	0.45	+0.6
1,476,267	-		SO1418	0.45	-1.9
1,476,276	+		SO1418	0.46	-1.0
1,476,277	+		SO1418	0.46	-0.1
1,476,277	+		SO1418	0.46	-1.0
1,476,277	+		SO1418	0.46	-2.7
1,476,283	+		SO1418	0.47	+1.9
1,476,285	-		SO1418	0.47	-0.5
1,476,288	+		SO1418	0.47	-0.4
1,476,291	-		SO1418	0.48	-2.2
1,476,306	-		SO1418	0.49	-1.1
1,476,335	+		SO1418	0.51	-0.2
1,476,335	+		SO1418	0.51	+1.9
1,476,335	+		SO1418	0.51	+1.2
1,476,335	+		SO1418	0.51	+0.1
1,476,335	+		SO1418	0.51	-0.4
1,476,335	+		SO1418	0.51	+1.1
1,476,343	-		SO1418	0.52	+2.2
1,476,343	-		SO1418	0.52	-1.9
1,476,343	-		SO1418	0.52	-1.1
1,476,343	-		SO1418	0.52	-1.2
1,476,343	-		SO1418	0.52	-1.0
1,476,343	-		SO1418	0.52	+0.2
1,476,343	-		SO1418	0.52	-0.5
1,476,343	-		SO1418	0.52	-1.3
1,476,343	-		SO1418	0.52	+1.2
1,476,343	-		SO1418	0.52	-1.3
1,476,343	-		SO1418	0.52	-0.3
1,476,343	-		SO1418	0.52	-0.2
1,476,343	-		SO1418	0.52	-0.4
1,476,343	-		SO1418	0.52	+0.0
1,476,343	-		SO1418	0.52	-1.1
1,476,343	-		SO1418	0.52	+2.7
1,476,356	-		SO1418	0.53	-2.1
1,476,361	-		SO1418	0.54	+0.0
1,476,363	+		SO1418	0.54	+0.9
1,476,363	+		SO1418	0.54	+0.3
1,476,371	-		SO1418	0.55	-2.5
1,476,386	+		SO1418	0.56	-1.3
1,476,391	+		SO1418	0.56	+1.0
1,476,404	+		SO1418	0.58	+0.0
1,476,406	+		SO1418	0.58	-0.4
1,476,412	-		SO1418	0.58	+0.6
1,476,412	-		SO1418	0.58	-0.7
1,476,414	-		SO1418	0.58	+0.3
1,476,414	-		SO1418	0.58	+0.0
1,476,422	+		SO1418	0.59	+1.5
1,476,422	+		SO1418	0.59	-1.1
1,476,422	-		SO1418	0.59	-0.4
1,476,430	-		SO1418	0.60	-2.5
1,476,432	+		SO1418	0.60	-0.7
1,476,432	+		SO1418	0.60	-3.5
1,476,440	-		SO1418	0.61	-1.7
1,476,441	+		SO1418	0.61	+1.7
1,476,441	+		SO1418	0.61	-0.6
1,476,441	+		SO1418	0.61	+1.3
1,476,449	-		SO1418	0.62	-1.5
1,476,449	-		SO1418	0.62	+0.7
1,476,454	-		SO1418	0.62	+0.8
1,476,462	+		SO1418	0.63	+1.6
1,476,470	-		SO1418	0.63	+0.0
1,476,470	-		SO1418	0.63	+0.7
1,476,474	+		SO1418	0.64	-0.7
1,476,475	+		SO1418	0.64	-1.8
1,476,480	+		SO1418	0.64	+0.1
1,476,483	-		SO1418	0.65	+0.5
1,476,483	-		SO1418	0.65	+0.8
1,476,483	-		SO1418	0.65	-2.0
1,476,485	+		SO1418	0.65	+0.7
1,476,488	-		SO1418	0.65	-0.1
1,476,496	+		SO1418	0.66	-0.2
1,476,496	+		SO1418	0.66	+0.4
1,476,496	+		SO1418	0.66	-0.4
1,476,496	+		SO1418	0.66	+0.9
1,476,496	+		SO1418	0.66	-0.1
1,476,496	+		SO1418	0.66	-0.1
1,476,496	+		SO1418	0.66	+1.6
1,476,496	+		SO1418	0.66	-1.5
1,476,501	+		SO1418	0.66	-1.0
1,476,501	+		SO1418	0.66	-1.9
1,476,501	+		SO1418	0.66	+0.5
1,476,501	+		SO1418	0.66	+0.7
1,476,501	+		SO1418	0.66	+3.2
1,476,501	+		SO1418	0.66	-2.4
1,476,501	+		SO1418	0.66	-1.4
1,476,501	+		SO1418	0.66	+1.0
1,476,501	+		SO1418	0.66	-2.0
1,476,501	+		SO1418	0.66	+1.7
1,476,501	+		SO1418	0.66	-0.6
1,476,501	+		SO1418	0.66	+1.0
1,476,501	+		SO1418	0.66	-2.1
1,476,501	+		SO1418	0.66	-1.9
1,476,501	+		SO1418	0.66	-0.1
1,476,501	+		SO1418	0.66	-1.3
1,476,501	+		SO1418	0.66	-1.3
1,476,501	+		SO1418	0.66	-1.8
1,476,501	+		SO1418	0.66	-1.1
1,476,501	+		SO1418	0.66	+0.1
1,476,501	+		SO1418	0.66	-0.6
1,476,501	+		SO1418	0.66	-3.0
1,476,501	+		SO1418	0.66	-1.4
1,476,501	+		SO1418	0.66	+0.8
1,476,501	+		SO1418	0.66	-2.6
1,476,501	+		SO1418	0.66	-1.3
1,476,501	+		SO1418	0.66	+1.9
1,476,501	+		SO1418	0.66	+0.9
1,476,501	+		SO1418	0.66	-2.9
1,476,501	+		SO1418	0.66	-1.6
1,476,501	+		SO1418	0.66	-0.2
1,476,501	+		SO1418	0.66	+0.4
1,476,501	+		SO1418	0.66	-1.1
1,476,501	+		SO1418	0.66	-0.6
1,476,501	+		SO1418	0.66	-2.2
1,476,501	+		SO1418	0.66	-0.4
1,476,501	+		SO1418	0.66	-3.3
1,476,501	+		SO1418	0.66	-0.2
1,476,501	+		SO1418	0.66	-0.8
1,476,504	-		SO1418	0.66	+1.1
1,476,504	-		SO1418	0.66	+2.7
1,476,504	-		SO1418	0.66	+0.6
1,476,504	-		SO1418	0.66	+2.1
1,476,504	-		SO1418	0.66	+0.7
1,476,504	-		SO1418	0.66	+0.2
1,476,504	-		SO1418	0.66	-3.3
1,476,504	-		SO1418	0.66	+1.6
1,476,509	-		SO1418	0.67	+0.7
1,476,509	-		SO1418	0.67	-0.1
1,476,509	-		SO1418	0.67	-2.9
1,476,509	-		SO1418	0.67	+1.7
1,476,509	-		SO1418	0.67	-1.3
1,476,509	-		SO1418	0.67	+2.1
1,476,509	-		SO1418	0.67	-0.5
1,476,509	-		SO1418	0.67	+0.1
1,476,509	-		SO1418	0.67	+0.9
1,476,509	-		SO1418	0.67	-0.7
1,476,509	-		SO1418	0.67	+1.9
1,476,509	-		SO1418	0.67	+0.5
1,476,509	-		SO1418	0.67	-0.3
1,476,509	-		SO1418	0.67	-1.0
1,476,509	-		SO1418	0.67	-1.0
1,476,509	-		SO1418	0.67	+0.7
1,476,509	-		SO1418	0.67	-0.1
1,476,509	-		SO1418	0.67	-1.9
1,476,509	-		SO1418	0.67	-0.1
1,476,509	-		SO1418	0.67	+0.1
1,476,509	-		SO1418	0.67	-1.9
1,476,509	-		SO1418	0.67	+1.1
1,476,509	-		SO1418	0.67	-2.1
1,476,509	-		SO1418	0.67	-1.5
1,476,509	-		SO1418	0.67	+0.9
1,476,509	-		SO1418	0.67	-2.1
1,476,509	-		SO1418	0.67	+0.1
1,476,509	-		SO1418	0.67	-0.1
1,476,509	-		SO1418	0.67	-0.6
1,476,509	-		SO1418	0.67	+2.6
1,476,509	-		SO1418	0.67	-2.1
1,476,524	-		SO1418	0.68	-0.9
1,476,549	-		SO1418	0.70	+0.4
1,476,576	-		SO1418	0.73	-0.1