Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepB and SO0877 are separated by 188 nucleotides SO0877 and prkB are separated by 373 nucleotides
SO0876: pepB - peptidase B (NCBI ptt file), at 905,612 to 906,904
pepB
SO0877: SO0877 - acetyltransferase, GNAT family (NCBI ptt file), at 907,093 to 907,602
SO0877
SO0878: prkB - phosphoribulokinase (NCBI ptt file), at 907,976 to 908,863
prkB
Position (kb) 907
908 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 906.202 kb on + strand, within pepB at 906.203 kb on + strand, within pepB at 906.299 kb on + strand, within pepB at 906.299 kb on + strand, within pepB at 906.299 kb on + strand, within pepB at 906.307 kb on - strand, within pepB at 906.307 kb on - strand, within pepB at 906.307 kb on - strand, within pepB at 906.368 kb on - strand, within pepB at 906.396 kb on + strand, within pepB at 906.444 kb on - strand, within pepB at 906.527 kb on + strand, within pepB at 906.655 kb on + strand, within pepB at 906.688 kb on + strand, within pepB at 906.771 kb on - strand, within pepB at 906.854 kb on + strand at 906.867 kb on + strand at 906.879 kb on + strand at 906.899 kb on + strand at 906.905 kb on + strand at 906.910 kb on + strand at 906.910 kb on + strand at 906.910 kb on + strand at 906.913 kb on - strand at 906.918 kb on - strand at 906.976 kb on + strand at 907.162 kb on + strand, within SO0877 at 907.376 kb on + strand, within SO0877 at 907.376 kb on + strand, within SO0877 at 907.549 kb on + strand, within SO0877 at 907.549 kb on + strand, within SO0877 at 907.549 kb on + strand, within SO0877 at 907.556 kb on + strand at 907.557 kb on - strand at 907.557 kb on - strand at 907.557 kb on - strand at 907.559 kb on + strand at 907.565 kb on - strand at 907.565 kb on - strand at 907.598 kb on + strand at 907.617 kb on - strand at 907.722 kb on + strand at 907.739 kb on + strand at 907.912 kb on - strand at 907.914 kb on + strand at 907.994 kb on + strand at 908.000 kb on - strand at 908.002 kb on - strand at 908.040 kb on + strand at 908.041 kb on + strand at 908.096 kb on - strand, within prkB at 908.181 kb on - strand, within prkB at 908.193 kb on - strand, within prkB at 908.216 kb on - strand, within prkB at 908.218 kb on + strand, within prkB at 908.299 kb on + strand, within prkB at 908.350 kb on + strand, within prkB at 908.372 kb on - strand, within prkB at 908.431 kb on + strand, within prkB at 908.455 kb on - strand, within prkB at 908.465 kb on + strand, within prkB at 908.473 kb on - strand, within prkB at 908.473 kb on - strand, within prkB at 908.473 kb on - strand, within prkB at 908.557 kb on + strand, within prkB
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 906,202 + pepB SO0876 0.46 +0.9 906,203 + pepB SO0876 0.46 -1.3 906,299 + pepB SO0876 0.53 +2.2 906,299 + pepB SO0876 0.53 -0.2 906,299 + pepB SO0876 0.53 -1.1 906,307 - pepB SO0876 0.54 +0.2 906,307 - pepB SO0876 0.54 +0.3 906,307 - pepB SO0876 0.54 -1.6 906,368 - pepB SO0876 0.58 -1.6 906,396 + pepB SO0876 0.61 -0.8 906,444 - pepB SO0876 0.64 +1.6 906,527 + pepB SO0876 0.71 +0.9 906,655 + pepB SO0876 0.81 -0.3 906,688 + pepB SO0876 0.83 -0.6 906,771 - pepB SO0876 0.90 -0.2 906,854 + -0.1 906,867 + -1.7 906,879 + +1.0 906,899 + +2.2 906,905 + +3.0 906,910 + +0.4 906,910 + +0.7 906,910 + -1.3 906,913 - +0.3 906,918 - -1.0 906,976 + +0.1 907,162 + SO0877 0.14 -1.0 907,376 + SO0877 0.55 +1.4 907,376 + SO0877 0.55 +1.5 907,549 + SO0877 0.89 +0.6 907,549 + SO0877 0.89 +2.7 907,549 + SO0877 0.89 -4.0 907,556 + -3.7 907,557 - +0.0 907,557 - +0.4 907,557 - +0.5 907,559 + -2.1 907,565 - +0.6 907,565 - -0.4 907,598 + -1.1 907,617 - +0.2 907,722 + +0.0 907,739 + +0.8 907,912 - -0.0 907,914 + -1.9 907,994 + -0.4 908,000 - +1.3 908,002 - +0.7 908,040 + +1.6 908,041 + -0.5 908,096 - prkB SO0878 0.14 +0.1 908,181 - prkB SO0878 0.23 +2.3 908,193 - prkB SO0878 0.24 -0.1 908,216 - prkB SO0878 0.27 +1.1 908,218 + prkB SO0878 0.27 -1.8 908,299 + prkB SO0878 0.36 -2.1 908,350 + prkB SO0878 0.42 +0.5 908,372 - prkB SO0878 0.45 -1.4 908,431 + prkB SO0878 0.51 +0.7 908,455 - prkB SO0878 0.54 +3.6 908,465 + prkB SO0878 0.55 +1.2 908,473 - prkB SO0878 0.56 -2.1 908,473 - prkB SO0878 0.56 +0.9 908,473 - prkB SO0878 0.56 -2.5 908,557 + prkB SO0878 0.65 -0.4
Or see this region's nucleotide sequence