Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0513 and SO0514 are separated by 97 nucleotides SO0514 and SO0515 are separated by 34 nucleotides SO0515 and SO0516 are separated by 119 nucleotides SO0516 and SO0518 are separated by 215 nucleotides
SO0513: SO0513 - prokaryotic and mitochondrial release factors family protein (NCBI ptt file), at 537,055 to 537,468
SO0513
SO0514: SO0514 - hypothetical protein (NCBI ptt file), at 537,566 to 537,973
SO0514
SO0515: SO0515 - hypothetical protein (NCBI ptt file), at 538,008 to 538,211
SO0515
SO0516: SO0516 - hypothetical protein (NCBI ptt file), at 538,331 to 538,813
SO0516
SO0518: SO0518 - outer membrane efflux family protein, putative (NCBI ptt file), at 539,029 to 540,387
SO0518
Position (kb) 538
539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.041 kb on + strand at 537.053 kb on + strand at 537.244 kb on - strand, within SO0513 at 537.324 kb on - strand, within SO0513 at 537.373 kb on - strand, within SO0513 at 537.468 kb on + strand at 537.515 kb on - strand at 537.554 kb on + strand at 537.554 kb on + strand at 537.562 kb on + strand at 537.562 kb on - strand at 537.602 kb on + strand at 537.602 kb on + strand at 537.603 kb on + strand at 537.603 kb on + strand at 537.610 kb on - strand, within SO0514 at 537.611 kb on - strand, within SO0514 at 537.611 kb on - strand, within SO0514 at 537.678 kb on - strand, within SO0514 at 537.849 kb on + strand, within SO0514 at 537.862 kb on + strand, within SO0514 at 537.983 kb on + strand at 537.991 kb on - strand at 537.991 kb on - strand at 537.999 kb on - strand at 538.038 kb on - strand, within SO0515 at 538.068 kb on + strand, within SO0515 at 538.076 kb on - strand, within SO0515 at 538.085 kb on + strand, within SO0515 at 538.107 kb on + strand, within SO0515 at 538.107 kb on + strand, within SO0515 at 538.110 kb on - strand, within SO0515 at 538.188 kb on + strand, within SO0515 at 538.305 kb on - strand at 538.441 kb on - strand, within SO0516 at 538.493 kb on + strand, within SO0516 at 538.493 kb on + strand, within SO0516 at 538.688 kb on + strand, within SO0516 at 538.688 kb on + strand, within SO0516 at 538.765 kb on - strand at 538.903 kb on - strand at 538.915 kb on + strand at 538.927 kb on + strand at 539.087 kb on + strand at 539.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 537,041 + -0.9 537,053 + +0.5 537,244 - SO0513 0.46 -1.9 537,324 - SO0513 0.65 +0.7 537,373 - SO0513 0.77 +0.8 537,468 + -0.7 537,515 - -1.5 537,554 + +1.7 537,554 + -1.2 537,562 + +0.5 537,562 - +0.7 537,602 + -0.3 537,602 + -0.2 537,603 + +0.5 537,603 + +0.4 537,610 - SO0514 0.11 +0.1 537,611 - SO0514 0.11 +1.3 537,611 - SO0514 0.11 -0.6 537,678 - SO0514 0.27 +1.1 537,849 + SO0514 0.69 -2.2 537,862 + SO0514 0.73 -1.1 537,983 + +2.0 537,991 - -0.8 537,991 - +1.1 537,999 - -3.0 538,038 - SO0515 0.15 +1.0 538,068 + SO0515 0.29 +1.2 538,076 - SO0515 0.33 +2.0 538,085 + SO0515 0.38 +0.9 538,107 + SO0515 0.49 -2.3 538,107 + SO0515 0.49 +1.2 538,110 - SO0515 0.50 +0.7 538,188 + SO0515 0.88 +0.7 538,305 - +0.1 538,441 - SO0516 0.23 +0.1 538,493 + SO0516 0.34 +1.0 538,493 + SO0516 0.34 -2.3 538,688 + SO0516 0.74 +0.1 538,688 + SO0516 0.74 -0.8 538,765 - -0.5 538,903 - +0.5 538,915 + +1.6 538,927 + -1.5 539,087 + -2.7 539,164 - -2.1
Or see this region's nucleotide sequence