Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0370 and SO0371 are separated by 22 nucleotides SO0371 and SO0372 are separated by 179 nucleotides SO0372 and SO_0373 are separated by 445 nucleotides
SO0370: SO0370 - conserved hypothetical protein (NCBI ptt file), at 383,887 to 384,378
SO0370
SO0371: SO0371 - conserved hypothetical protein (NCBI ptt file), at 384,401 to 384,862
SO0371
SO0372: SO0372 - HAD-superfamily hydrolase, subfamily IA, variant 1 protein family (NCBI ptt file), at 385,042 to 385,746
SO0372
SO_0373: SO_0373 - no description, at 386,192 to 387,124
_0373
Position (kb) 385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 384.188 kb on - strand, within SO0370 at 384.188 kb on - strand, within SO0370 at 384.232 kb on - strand, within SO0370 at 384.253 kb on + strand, within SO0370 at 384.321 kb on + strand, within SO0370 at 384.425 kb on - strand at 384.427 kb on + strand at 384.435 kb on - strand at 384.435 kb on - strand at 384.435 kb on - strand at 384.446 kb on + strand at 384.481 kb on + strand, within SO0371 at 384.494 kb on - strand, within SO0371 at 384.533 kb on - strand, within SO0371 at 384.594 kb on - strand, within SO0371 at 384.604 kb on - strand, within SO0371 at 384.607 kb on + strand, within SO0371 at 384.615 kb on - strand, within SO0371 at 384.671 kb on - strand, within SO0371 at 384.691 kb on + strand, within SO0371 at 384.699 kb on - strand, within SO0371 at 384.717 kb on + strand, within SO0371 at 384.725 kb on - strand, within SO0371 at 384.843 kb on - strand at 384.960 kb on - strand at 385.044 kb on - strand at 385.051 kb on + strand at 385.057 kb on + strand at 385.059 kb on - strand at 385.069 kb on + strand at 385.075 kb on + strand at 385.077 kb on - strand at 385.141 kb on + strand, within SO0372 at 385.149 kb on - strand, within SO0372 at 385.301 kb on - strand, within SO0372 at 385.312 kb on + strand, within SO0372 at 385.320 kb on - strand, within SO0372 at 385.395 kb on + strand, within SO0372 at 385.445 kb on - strand, within SO0372 at 385.516 kb on + strand, within SO0372 at 385.553 kb on + strand, within SO0372 at 385.582 kb on + strand, within SO0372 at 385.583 kb on + strand, within SO0372 at 386.032 kb on - strand at 386.064 kb on - strand at 386.267 kb on - strand at 386.269 kb on - strand at 386.334 kb on - strand, within SO_0373 at 386.358 kb on - strand, within SO_0373 at 386.359 kb on - strand, within SO_0373 at 386.387 kb on + strand, within SO_0373 at 386.394 kb on + strand, within SO_0373 at 386.394 kb on + strand, within SO_0373 at 386.396 kb on - strand, within SO_0373 at 386.402 kb on - strand, within SO_0373 at 386.404 kb on - strand, within SO_0373 at 386.540 kb on + strand, within SO_0373 at 386.548 kb on - strand, within SO_0373 at 386.595 kb on - strand, within SO_0373 at 386.622 kb on - strand, within SO_0373 at 386.692 kb on + strand, within SO_0373 at 386.700 kb on - strand, within SO_0373 at 386.723 kb on + strand, within SO_0373 at 386.731 kb on - strand, within SO_0373
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 384,188 - SO0370 0.61 +0.5 384,188 - SO0370 0.61 +1.5 384,232 - SO0370 0.70 -2.3 384,253 + SO0370 0.74 -2.3 384,321 + SO0370 0.88 -0.2 384,425 - -0.5 384,427 + -0.5 384,435 - -2.7 384,435 - +0.4 384,435 - +1.4 384,446 + +2.5 384,481 + SO0371 0.17 -2.6 384,494 - SO0371 0.20 -1.8 384,533 - SO0371 0.29 -1.0 384,594 - SO0371 0.42 -0.6 384,604 - SO0371 0.44 +0.2 384,607 + SO0371 0.45 -0.0 384,615 - SO0371 0.46 -1.2 384,671 - SO0371 0.58 -1.5 384,691 + SO0371 0.63 -1.2 384,699 - SO0371 0.65 +1.6 384,717 + SO0371 0.68 -2.7 384,725 - SO0371 0.70 +0.8 384,843 - +0.3 384,960 - +0.7 385,044 - +1.1 385,051 + -0.6 385,057 + +1.2 385,059 - -3.6 385,069 + +0.1 385,075 + -2.2 385,077 - +1.3 385,141 + SO0372 0.14 +0.6 385,149 - SO0372 0.15 +3.0 385,301 - SO0372 0.37 -1.3 385,312 + SO0372 0.38 +0.1 385,320 - SO0372 0.39 -1.6 385,395 + SO0372 0.50 -2.1 385,445 - SO0372 0.57 -1.6 385,516 + SO0372 0.67 -1.0 385,553 + SO0372 0.72 -1.7 385,582 + SO0372 0.77 -0.7 385,583 + SO0372 0.77 +1.2 386,032 - +1.2 386,064 - +1.7 386,267 - -0.0 386,269 - +0.0 386,334 - SO_0373 0.15 -1.6 386,358 - SO_0373 0.18 +0.7 386,359 - SO_0373 0.18 -2.1 386,387 + SO_0373 0.21 +0.5 386,394 + SO_0373 0.22 +0.4 386,394 + SO_0373 0.22 -0.1 386,396 - SO_0373 0.22 -0.6 386,402 - SO_0373 0.23 +0.4 386,404 - SO_0373 0.23 -0.3 386,540 + SO_0373 0.37 +1.1 386,548 - SO_0373 0.38 +0.1 386,595 - SO_0373 0.43 +2.1 386,622 - SO_0373 0.46 -1.0 386,692 + SO_0373 0.54 -0.0 386,700 - SO_0373 0.54 +2.9 386,723 + SO_0373 0.57 +0.1 386,731 - SO_0373 0.58 -0.4
Or see this region's nucleotide sequence