Experiment: fumarate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mioC and SO0002 are separated by 179 nucleotides SO0002 and trmE are separated by 84 nucleotides
SO0001: mioC - mioC protein (NCBI ptt file), at 334 to 774
mioC
SO0002: SO0002 - proton/peptide symporter family protein (NCBI ptt file), at 954 to 2,504
SO0002
SO0003: trmE - tRNA modification GTPase TrmE (NCBI ptt file), at 2,589 to 3,962
trmE
Position (kb) 0
1
2
3 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 0.315 kb on - strand at 0.452 kb on - strand, within mioC at 0.566 kb on - strand, within mioC at 0.679 kb on - strand, within mioC at 0.793 kb on - strand at 0.885 kb on - strand at 0.885 kb on - strand at 0.891 kb on - strand at 0.910 kb on - strand at 0.945 kb on + strand at 0.995 kb on - strand at 1.088 kb on + strand at 1.093 kb on + strand at 1.095 kb on + strand at 1.104 kb on - strand at 1.106 kb on + strand at 1.124 kb on + strand, within SO0002 at 1.124 kb on + strand, within SO0002 at 1.138 kb on + strand, within SO0002 at 1.143 kb on + strand, within SO0002 at 1.213 kb on - strand, within SO0002 at 1.215 kb on + strand, within SO0002 at 1.248 kb on - strand, within SO0002 at 1.311 kb on + strand, within SO0002 at 1.341 kb on + strand, within SO0002 at 1.517 kb on - strand, within SO0002 at 1.517 kb on - strand, within SO0002 at 1.524 kb on - strand, within SO0002 at 1.553 kb on + strand, within SO0002 at 1.722 kb on - strand, within SO0002 at 1.840 kb on + strand, within SO0002 at 1.940 kb on + strand, within SO0002 at 1.947 kb on + strand, within SO0002 at 1.949 kb on - strand, within SO0002 at 1.954 kb on + strand, within SO0002 at 1.955 kb on + strand, within SO0002 at 1.955 kb on + strand, within SO0002 at 1.963 kb on - strand, within SO0002 at 1.978 kb on + strand, within SO0002 at 2.001 kb on + strand, within SO0002 at 2.053 kb on - strand, within SO0002 at 2.103 kb on + strand, within SO0002 at 2.103 kb on + strand, within SO0002 at 2.160 kb on - strand, within SO0002 at 2.177 kb on + strand, within SO0002 at 2.211 kb on + strand, within SO0002 at 2.272 kb on + strand, within SO0002 at 2.315 kb on + strand, within SO0002 at 2.350 kb on + strand at 2.358 kb on - strand at 2.408 kb on - strand at 2.454 kb on + strand at 2.454 kb on - strand at 2.462 kb on - strand at 2.462 kb on - strand at 2.770 kb on + strand, within trmE at 2.778 kb on - strand, within trmE at 2.778 kb on - strand, within trmE at 2.846 kb on + strand, within trmE at 2.846 kb on + strand, within trmE at 3.134 kb on + strand, within trmE at 3.137 kb on - strand, within trmE at 3.342 kb on - strand, within trmE
Per-strain Table
Position Strand Gene LocusTag Fraction fumarate electron acceptor remove 315 - -0.5 452 - mioC SO0001 0.27 +2.1 566 - mioC SO0001 0.53 +2.1 679 - mioC SO0001 0.78 +2.1 793 - +1.3 885 - -2.1 885 - +0.9 891 - +1.5 910 - -0.2 945 + -0.2 995 - -0.5 1,088 + +0.7 1,093 + +0.4 1,095 + -0.1 1,104 - +0.6 1,106 + +0.3 1,124 + SO0002 0.11 -0.5 1,124 + SO0002 0.11 +2.1 1,138 + SO0002 0.12 +4.3 1,143 + SO0002 0.12 +1.7 1,213 - SO0002 0.17 +5.9 1,215 + SO0002 0.17 +1.1 1,248 - SO0002 0.19 +0.3 1,311 + SO0002 0.23 +1.0 1,341 + SO0002 0.25 +0.6 1,517 - SO0002 0.36 +0.2 1,517 - SO0002 0.36 -0.7 1,524 - SO0002 0.37 -2.1 1,553 + SO0002 0.39 +0.3 1,722 - SO0002 0.50 -2.6 1,840 + SO0002 0.57 +0.5 1,940 + SO0002 0.64 -1.0 1,947 + SO0002 0.64 -1.6 1,949 - SO0002 0.64 -0.1 1,954 + SO0002 0.64 +0.7 1,955 + SO0002 0.65 +2.1 1,955 + SO0002 0.65 -1.7 1,963 - SO0002 0.65 +0.3 1,978 + SO0002 0.66 -3.0 2,001 + SO0002 0.68 +1.6 2,053 - SO0002 0.71 +1.2 2,103 + SO0002 0.74 -0.3 2,103 + SO0002 0.74 -1.6 2,160 - SO0002 0.78 +2.5 2,177 + SO0002 0.79 -2.0 2,211 + SO0002 0.81 +2.0 2,272 + SO0002 0.85 -3.3 2,315 + SO0002 0.88 -0.6 2,350 + +0.1 2,358 - +0.0 2,408 - +1.5 2,454 + +0.8 2,454 - -2.7 2,462 - +2.8 2,462 - +0.5 2,770 + trmE SO0003 0.13 +0.5 2,778 - trmE SO0003 0.14 +2.1 2,778 - trmE SO0003 0.14 +0.1 2,846 + trmE SO0003 0.19 -0.9 2,846 + trmE SO0003 0.19 -0.2 3,134 + trmE SO0003 0.40 -0.5 3,137 - trmE SO0003 0.40 -1.5 3,342 - trmE SO0003 0.55 +0.1
Or see this region's nucleotide sequence