Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3251

Experiment: KB with Oxonitine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3249 and Psyr_3250 are separated by 42 nucleotidesPsyr_3250 and Psyr_3251 are separated by 111 nucleotidesPsyr_3251 and Psyr_3252 are separated by 194 nucleotides Psyr_3249: Psyr_3249 - conserved hypothetical protein, at 3,892,551 to 3,893,954 _3249 Psyr_3250: Psyr_3250 - Helix-turn-helix motif protein, at 3,893,997 to 3,894,566 _3250 Psyr_3251: Psyr_3251 - Protein of unknown function DUF6, at 3,894,678 to 3,895,613 _3251 Psyr_3252: Psyr_3252 - multisubunit potassium/proton antiporter, PhaA subunit / multisubunit potassium/proton antiporter, PhaB subunit, at 3,895,808 to 3,898,726 _3252 Position (kb) 3894 3895 3896Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3893.704 kb on + strand, within Psyr_3249at 3893.705 kb on - strand, within Psyr_3249at 3893.705 kb on - strand, within Psyr_3249at 3893.780 kb on + strand, within Psyr_3249at 3893.781 kb on - strand, within Psyr_3249at 3893.803 kb on + strand, within Psyr_3249at 3893.803 kb on + strand, within Psyr_3249at 3894.012 kb on - strandat 3894.012 kb on - strandat 3894.154 kb on + strand, within Psyr_3250at 3894.154 kb on + strand, within Psyr_3250at 3894.155 kb on - strand, within Psyr_3250at 3894.155 kb on - strand, within Psyr_3250at 3894.155 kb on - strand, within Psyr_3250at 3894.196 kb on + strand, within Psyr_3250at 3894.196 kb on + strand, within Psyr_3250at 3894.196 kb on + strand, within Psyr_3250at 3894.197 kb on - strand, within Psyr_3250at 3894.197 kb on - strand, within Psyr_3250at 3894.291 kb on - strand, within Psyr_3250at 3894.322 kb on + strand, within Psyr_3250at 3894.323 kb on - strand, within Psyr_3250at 3894.599 kb on - strandat 3894.657 kb on + strandat 3894.697 kb on + strandat 3894.876 kb on - strand, within Psyr_3251at 3894.876 kb on - strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.996 kb on + strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3894.997 kb on - strand, within Psyr_3251at 3895.200 kb on + strand, within Psyr_3251at 3895.201 kb on - strand, within Psyr_3251at 3895.420 kb on - strand, within Psyr_3251at 3895.679 kb on + strandat 3895.680 kb on - strandat 3895.682 kb on + strandat 3895.682 kb on + strandat 3895.683 kb on - strandat 3895.683 kb on - strandat 3895.692 kb on + strandat 3895.693 kb on - strandat 3895.753 kb on + strandat 3895.772 kb on + strandat 3895.800 kb on - strandat 3895.800 kb on - strandat 3895.807 kb on + strandat 3895.807 kb on + strandat 3895.808 kb on - strandat 3895.808 kb on - strandat 3895.819 kb on - strandat 3895.819 kb on - strandat 3895.819 kb on - strandat 3895.985 kb on + strandat 3895.985 kb on + strandat 3895.985 kb on + strandat 3895.986 kb on - strandat 3895.986 kb on - strandat 3895.986 kb on - strandat 3896.099 kb on + strandat 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.102 kb on + strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strandat 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.103 kb on - strand, within Psyr_3252at 3896.288 kb on + strand, within Psyr_3252at 3896.288 kb on + strand, within Psyr_3252at 3896.288 kb on + strand, within Psyr_3252at 3896.289 kb on - strand, within Psyr_3252at 3896.289 kb on - strand, within Psyr_3252at 3896.289 kb on - strand, within Psyr_3252at 3896.289 kb on - strand, within Psyr_3252at 3896.289 kb on - strand, within Psyr_3252at 3896.369 kb on + strand, within Psyr_3252at 3896.370 kb on - strand, within Psyr_3252at 3896.535 kb on - strand, within Psyr_3252

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Oxonitine 10 mM
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3,893,704 + Psyr_3249 0.82 +0.3
3,893,705 - Psyr_3249 0.82 -1.5
3,893,705 - Psyr_3249 0.82 +0.2
3,893,780 + Psyr_3249 0.88 +0.2
3,893,781 - Psyr_3249 0.88 -2.3
3,893,803 + Psyr_3249 0.89 +1.3
3,893,803 + Psyr_3249 0.89 -0.5
3,894,012 - +0.2
3,894,012 - +0.8
3,894,154 + Psyr_3250 0.28 -1.3
3,894,154 + Psyr_3250 0.28 -0.6
3,894,155 - Psyr_3250 0.28 +0.7
3,894,155 - Psyr_3250 0.28 +0.6
3,894,155 - Psyr_3250 0.28 -0.5
3,894,196 + Psyr_3250 0.35 +0.7
3,894,196 + Psyr_3250 0.35 +0.3
3,894,196 + Psyr_3250 0.35 -1.1
3,894,197 - Psyr_3250 0.35 -0.6
3,894,197 - Psyr_3250 0.35 +0.9
3,894,291 - Psyr_3250 0.52 -0.5
3,894,322 + Psyr_3250 0.57 +0.8
3,894,323 - Psyr_3250 0.57 +0.2
3,894,599 - +0.6
3,894,657 + -0.4
3,894,697 + -0.7
3,894,876 - Psyr_3251 0.21 -0.5
3,894,876 - Psyr_3251 0.21 +0.5
3,894,996 + Psyr_3251 0.34 -1.5
3,894,996 + Psyr_3251 0.34 +0.4
3,894,996 + Psyr_3251 0.34 -0.7
3,894,996 + Psyr_3251 0.34 -0.2
3,894,996 + Psyr_3251 0.34 -0.1
3,894,996 + Psyr_3251 0.34 +0.8
3,894,997 - Psyr_3251 0.34 -0.6
3,894,997 - Psyr_3251 0.34 -0.5
3,894,997 - Psyr_3251 0.34 -0.4
3,894,997 - Psyr_3251 0.34 -0.1
3,894,997 - Psyr_3251 0.34 +0.0
3,895,200 + Psyr_3251 0.56 -2.0
3,895,201 - Psyr_3251 0.56 -1.0
3,895,420 - Psyr_3251 0.79 -1.5
3,895,679 + -0.5
3,895,680 - -1.7
3,895,682 + -0.3
3,895,682 + -0.7
3,895,683 - +1.0
3,895,683 - +3.2
3,895,692 + +0.9
3,895,693 - -0.5
3,895,753 + +1.3
3,895,772 + +0.6
3,895,800 - -0.8
3,895,800 - -0.4
3,895,807 + +0.5
3,895,807 + +1.5
3,895,808 - +0.6
3,895,808 - +0.6
3,895,819 - -0.1
3,895,819 - +0.0
3,895,819 - +0.1
3,895,985 + -0.7
3,895,985 + +1.3
3,895,985 + -0.9
3,895,986 - -2.0
3,895,986 - +0.0
3,895,986 - -0.2
3,896,099 + +0.5
3,896,102 + Psyr_3252 0.10 -1.8
3,896,102 + Psyr_3252 0.10 +0.2
3,896,102 + Psyr_3252 0.10 -0.9
3,896,102 + Psyr_3252 0.10 -0.1
3,896,102 + Psyr_3252 0.10 -0.5
3,896,102 + Psyr_3252 0.10 +1.2
3,896,102 + Psyr_3252 0.10 -0.4
3,896,102 + Psyr_3252 0.10 +0.6
3,896,102 + Psyr_3252 0.10 +0.3
3,896,102 + Psyr_3252 0.10 -1.2
3,896,102 + Psyr_3252 0.10 +0.8
3,896,102 + Psyr_3252 0.10 +1.0
3,896,102 + Psyr_3252 0.10 -1.5
3,896,102 + Psyr_3252 0.10 -1.0
3,896,102 + Psyr_3252 0.10 +0.4
3,896,102 + Psyr_3252 0.10 +0.5
3,896,102 + Psyr_3252 0.10 +0.4
3,896,103 - Psyr_3252 0.10 +1.0
3,896,103 - Psyr_3252 0.10 +0.3
3,896,103 - +2.0
3,896,103 - Psyr_3252 0.10 -0.1
3,896,103 - Psyr_3252 0.10 -0.3
3,896,103 - Psyr_3252 0.10 +1.0
3,896,103 - Psyr_3252 0.10 -0.2
3,896,103 - Psyr_3252 0.10 +0.5
3,896,103 - Psyr_3252 0.10 +0.2
3,896,103 - Psyr_3252 0.10 -1.8
3,896,103 - Psyr_3252 0.10 +0.3
3,896,103 - Psyr_3252 0.10 -1.2
3,896,103 - Psyr_3252 0.10 +0.3
3,896,103 - Psyr_3252 0.10 -0.8
3,896,103 - Psyr_3252 0.10 +0.0
3,896,103 - Psyr_3252 0.10 +0.3
3,896,288 + Psyr_3252 0.16 +0.8
3,896,288 + Psyr_3252 0.16 -0.6
3,896,288 + Psyr_3252 0.16 +0.3
3,896,289 - Psyr_3252 0.16 +0.2
3,896,289 - Psyr_3252 0.16 -0.2
3,896,289 - Psyr_3252 0.16 -0.2
3,896,289 - Psyr_3252 0.16 +0.0
3,896,289 - Psyr_3252 0.16 -0.6
3,896,369 + Psyr_3252 0.19 -0.8
3,896,370 - Psyr_3252 0.19 -0.2
3,896,535 - Psyr_3252 0.25 -0.8

Or see this region's nucleotide sequence