Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22040

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS22035 and BWI76_RS22040 are separated by 87 nucleotidesBWI76_RS22040 and BWI76_RS22045 are separated by 183 nucleotidesBWI76_RS22045 and BWI76_RS22050 overlap by 4 nucleotidesBWI76_RS22050 and BWI76_RS22055 overlap by 28 nucleotides BWI76_RS22035: BWI76_RS22035 - DeoR family transcriptional regulator, at 4,600,281 to 4,601,639 _RS22035 BWI76_RS22040: BWI76_RS22040 - carboxymuconolactone decarboxylase family protein, at 4,601,727 to 4,602,158 _RS22040 BWI76_RS22045: BWI76_RS22045 - NrdH-redoxin, at 4,602,342 to 4,602,587 _RS22045 BWI76_RS22050: BWI76_RS22050 - class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI, at 4,602,584 to 4,602,994 _RS22050 BWI76_RS22055: BWI76_RS22055 - ribonucleotide-diphosphate reductase, at 4,602,967 to 4,605,111 _RS22055 Position (kb) 4601 4602 4603Strain fitness (log2 ratio) -2 -1 0 1at 4600.735 kb on + strand, within BWI76_RS22035at 4600.873 kb on + strand, within BWI76_RS22035at 4600.937 kb on - strand, within BWI76_RS22035at 4600.939 kb on + strand, within BWI76_RS22035at 4600.986 kb on + strand, within BWI76_RS22035at 4601.128 kb on - strand, within BWI76_RS22035at 4601.498 kb on - strand, within BWI76_RS22035at 4601.527 kb on + strandat 4601.551 kb on - strandat 4601.671 kb on + strandat 4601.671 kb on + strandat 4601.673 kb on + strandat 4601.679 kb on - strandat 4601.783 kb on + strand, within BWI76_RS22040at 4601.784 kb on + strand, within BWI76_RS22040at 4601.894 kb on + strand, within BWI76_RS22040at 4601.894 kb on - strand, within BWI76_RS22040at 4601.896 kb on + strand, within BWI76_RS22040at 4601.902 kb on - strand, within BWI76_RS22040at 4601.904 kb on - strand, within BWI76_RS22040at 4601.930 kb on - strand, within BWI76_RS22040at 4602.856 kb on - strand, within BWI76_RS22050at 4602.916 kb on + strand, within BWI76_RS22050at 4602.924 kb on + strand, within BWI76_RS22050at 4602.924 kb on + strand, within BWI76_RS22050at 4602.988 kb on - strandat 4603.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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4,600,735 + BWI76_RS22035 0.33 +0.1
4,600,873 + BWI76_RS22035 0.44 -0.6
4,600,937 - BWI76_RS22035 0.48 -2.5
4,600,939 + BWI76_RS22035 0.48 +0.4
4,600,986 + BWI76_RS22035 0.52 +0.1
4,601,128 - BWI76_RS22035 0.62 -0.3
4,601,498 - BWI76_RS22035 0.90 -0.2
4,601,527 + -0.5
4,601,551 - -0.6
4,601,671 + +0.2
4,601,671 + +0.1
4,601,673 + +0.9
4,601,679 - -1.8
4,601,783 + BWI76_RS22040 0.13 +1.1
4,601,784 + BWI76_RS22040 0.13 +1.3
4,601,894 + BWI76_RS22040 0.39 +1.0
4,601,894 - BWI76_RS22040 0.39 -0.3
4,601,896 + BWI76_RS22040 0.39 +0.2
4,601,902 - BWI76_RS22040 0.41 +1.3
4,601,904 - BWI76_RS22040 0.41 +0.4
4,601,930 - BWI76_RS22040 0.47 +1.1
4,602,856 - BWI76_RS22050 0.66 -0.9
4,602,916 + BWI76_RS22050 0.81 -0.0
4,602,924 + BWI76_RS22050 0.83 +0.5
4,602,924 + BWI76_RS22050 0.83 +0.5
4,602,988 - +0.3
4,603,129 + +0.3

Or see this region's nucleotide sequence