Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19990

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19985 and BWI76_RS19990 are separated by 52 nucleotidesBWI76_RS19990 and BWI76_RS19995 are separated by 13 nucleotides BWI76_RS19985: BWI76_RS19985 - MFS transporter, at 4,186,618 to 4,187,907 _RS19985 BWI76_RS19990: BWI76_RS19990 - L-rhamnonate dehydratase, at 4,187,960 to 4,189,165 _RS19990 BWI76_RS19995: BWI76_RS19995 - IclR family transcriptional regulator, at 4,189,179 to 4,189,961 _RS19995 Position (kb) 4187 4188 4189 4190Strain fitness (log2 ratio) -2 -1 0 1at 4187.033 kb on + strand, within BWI76_RS19985at 4187.033 kb on + strand, within BWI76_RS19985at 4187.905 kb on - strandat 4187.934 kb on + strandat 4187.942 kb on - strandat 4187.944 kb on + strandat 4188.127 kb on - strand, within BWI76_RS19990at 4188.325 kb on - strand, within BWI76_RS19990at 4188.347 kb on + strand, within BWI76_RS19990at 4188.490 kb on + strand, within BWI76_RS19990at 4188.834 kb on - strand, within BWI76_RS19990at 4189.018 kb on + strand, within BWI76_RS19990at 4189.302 kb on - strand, within BWI76_RS19995at 4189.375 kb on - strand, within BWI76_RS19995at 4189.976 kb on - strandat 4190.084 kb on + strandat 4190.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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4,187,033 + BWI76_RS19985 0.32 -1.8
4,187,033 + BWI76_RS19985 0.32 +0.4
4,187,905 - +1.1
4,187,934 + +0.5
4,187,942 - +1.5
4,187,944 + -0.4
4,188,127 - BWI76_RS19990 0.14 +1.4
4,188,325 - BWI76_RS19990 0.30 +0.3
4,188,347 + BWI76_RS19990 0.32 +1.0
4,188,490 + BWI76_RS19990 0.44 +0.2
4,188,834 - BWI76_RS19990 0.72 +0.4
4,189,018 + BWI76_RS19990 0.88 +0.7
4,189,302 - BWI76_RS19995 0.16 +0.4
4,189,375 - BWI76_RS19995 0.25 +0.3
4,189,976 - -0.2
4,190,084 + -0.3
4,190,092 - -0.1

Or see this region's nucleotide sequence