Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19515

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19510 and BWI76_RS19515 are separated by 194 nucleotidesBWI76_RS19515 and BWI76_RS19520 are separated by 97 nucleotidesBWI76_RS19520 and BWI76_RS19525 are separated by 138 nucleotides BWI76_RS19510: BWI76_RS19510 - beta-glucosidase, at 4,076,273 to 4,078,570 _RS19510 BWI76_RS19515: BWI76_RS19515 - D-lactate dehydrogenase (cytochrome c-553) (EC 1.1.2.5) (from data), at 4,078,765 to 4,080,507 _RS19515 BWI76_RS19520: BWI76_RS19520 - acetyltransferase GCN5, at 4,080,605 to 4,081,159 _RS19520 BWI76_RS19525: BWI76_RS19525 - D-alanyl-D-alanine endopeptidase, at 4,081,298 to 4,082,245 _RS19525 Position (kb) 4078 4079 4080 4081Strain fitness (log2 ratio) -1 0 1 2 3at 4077.902 kb on + strand, within BWI76_RS19510at 4077.954 kb on - strand, within BWI76_RS19510at 4077.990 kb on - strand, within BWI76_RS19510at 4078.195 kb on + strand, within BWI76_RS19510at 4078.289 kb on + strand, within BWI76_RS19510at 4078.348 kb on - strandat 4078.804 kb on + strandat 4078.893 kb on - strandat 4078.934 kb on - strandat 4079.032 kb on + strand, within BWI76_RS19515at 4079.114 kb on - strand, within BWI76_RS19515at 4079.978 kb on - strand, within BWI76_RS19515at 4080.137 kb on + strand, within BWI76_RS19515at 4080.177 kb on + strand, within BWI76_RS19515at 4080.333 kb on + strandat 4080.371 kb on - strandat 4080.419 kb on + strandat 4080.523 kb on + strandat 4080.542 kb on + strandat 4080.550 kb on - strandat 4080.699 kb on - strand, within BWI76_RS19520at 4080.728 kb on - strand, within BWI76_RS19520at 4080.884 kb on - strand, within BWI76_RS19520

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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4,077,902 + BWI76_RS19510 0.71 -0.3
4,077,954 - BWI76_RS19510 0.73 -0.5
4,077,990 - BWI76_RS19510 0.75 -0.3
4,078,195 + BWI76_RS19510 0.84 -0.9
4,078,289 + BWI76_RS19510 0.88 -0.5
4,078,348 - +0.0
4,078,804 + +0.2
4,078,893 - +3.6
4,078,934 - -0.3
4,079,032 + BWI76_RS19515 0.15 +1.5
4,079,114 - BWI76_RS19515 0.20 +1.0
4,079,978 - BWI76_RS19515 0.70 +0.6
4,080,137 + BWI76_RS19515 0.79 +1.3
4,080,177 + BWI76_RS19515 0.81 +1.0
4,080,333 + -0.3
4,080,371 - -0.8
4,080,419 + +0.3
4,080,523 + +1.3
4,080,542 + +2.6
4,080,550 - +0.2
4,080,699 - BWI76_RS19520 0.17 +0.6
4,080,728 - BWI76_RS19520 0.22 -0.5
4,080,884 - BWI76_RS19520 0.50 -0.8

Or see this region's nucleotide sequence