Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19480

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19475 and BWI76_RS19480 are separated by 210 nucleotidesBWI76_RS19480 and BWI76_RS19485 are separated by 159 nucleotidesBWI76_RS19485 and BWI76_RS19490 overlap by 26 nucleotidesBWI76_RS19490 and BWI76_RS19495 overlap by 17 nucleotides BWI76_RS19475: BWI76_RS19475 - signal transduction histidine kinase, at 4,069,457 to 4,071,145 _RS19475 BWI76_RS19480: BWI76_RS19480 - transcriptional regulator, at 4,071,356 to 4,072,114 _RS19480 BWI76_RS19485: BWI76_RS19485 - membrane protein, at 4,072,274 to 4,072,387 _RS19485 BWI76_RS19490: BWI76_RS19490 - binding-protein-dependent transport system inner membrane protein, at 4,072,362 to 4,073,099 _RS19490 BWI76_RS19495: BWI76_RS19495 - ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein, at 4,073,083 to 4,074,030 _RS19495 Position (kb) 4071 4072 4073Strain fitness (log2 ratio) -2 -1 0 1at 4070.380 kb on - strand, within BWI76_RS19475at 4070.627 kb on - strand, within BWI76_RS19475at 4070.627 kb on - strand, within BWI76_RS19475at 4070.779 kb on - strand, within BWI76_RS19475at 4070.794 kb on - strand, within BWI76_RS19475at 4071.122 kb on - strandat 4071.333 kb on + strandat 4071.663 kb on + strand, within BWI76_RS19480at 4071.682 kb on + strand, within BWI76_RS19480at 4071.906 kb on - strand, within BWI76_RS19480at 4072.173 kb on - strandat 4072.179 kb on + strandat 4072.249 kb on - strandat 4072.623 kb on - strand, within BWI76_RS19490at 4072.733 kb on + strand, within BWI76_RS19490at 4072.941 kb on - strandat 4073.016 kb on - strand, within BWI76_RS19490

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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4,070,380 - BWI76_RS19475 0.55 -0.3
4,070,627 - BWI76_RS19475 0.69 -0.5
4,070,627 - BWI76_RS19475 0.69 -2.4
4,070,779 - BWI76_RS19475 0.78 -0.2
4,070,794 - BWI76_RS19475 0.79 +0.2
4,071,122 - +0.4
4,071,333 + -0.5
4,071,663 + BWI76_RS19480 0.40 +1.0
4,071,682 + BWI76_RS19480 0.43 +0.2
4,071,906 - BWI76_RS19480 0.72 +1.6
4,072,173 - +0.7
4,072,179 + +0.3
4,072,249 - -2.0
4,072,623 - BWI76_RS19490 0.35 +0.3
4,072,733 + BWI76_RS19490 0.50 +1.0
4,072,941 - -1.5
4,073,016 - BWI76_RS19490 0.89 -0.1

Or see this region's nucleotide sequence