Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17980

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17975 and BWI76_RS17980 are separated by 19 nucleotidesBWI76_RS17980 and BWI76_RS17985 are separated by 97 nucleotidesBWI76_RS17985 and BWI76_RS17990 are separated by 132 nucleotides BWI76_RS17975: BWI76_RS17975 - tail-specific protease, at 3,734,041 to 3,736,089 _RS17975 BWI76_RS17980: BWI76_RS17980 - RNA chaperone ProQ, at 3,736,109 to 3,736,792 _RS17980 BWI76_RS17985: BWI76_RS17985 - hypothetical protein, at 3,736,890 to 3,737,387 _RS17985 BWI76_RS17990: BWI76_RS17990 - paraquat-inducible membrane protein A, at 3,737,520 to 3,738,803 _RS17990 Position (kb) 3736 3737Strain fitness (log2 ratio) -1 0 1 2 3 4at 3735.745 kb on - strand, within BWI76_RS17975at 3735.988 kb on - strandat 3736.159 kb on + strandat 3736.446 kb on + strand, within BWI76_RS17980at 3736.446 kb on + strand, within BWI76_RS17980at 3736.454 kb on - strand, within BWI76_RS17980at 3736.575 kb on - strand, within BWI76_RS17980at 3736.575 kb on - strand, within BWI76_RS17980at 3736.582 kb on + strand, within BWI76_RS17980at 3736.871 kb on + strandat 3736.871 kb on + strandat 3737.128 kb on - strand, within BWI76_RS17985at 3737.202 kb on + strand, within BWI76_RS17985at 3737.251 kb on - strand, within BWI76_RS17985at 3737.363 kb on - strandat 3737.365 kb on + strandat 3737.413 kb on + strandat 3737.421 kb on - strandat 3737.421 kb on - strandat 3737.421 kb on - strandat 3737.421 kb on - strandat 3737.421 kb on - strandat 3737.492 kb on + strandat 3737.539 kb on + strandat 3737.547 kb on - strandat 3737.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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3,735,745 - BWI76_RS17975 0.83 +3.1
3,735,988 - +3.3
3,736,159 + +4.2
3,736,446 + BWI76_RS17980 0.49 +2.7
3,736,446 + BWI76_RS17980 0.49 +3.0
3,736,454 - BWI76_RS17980 0.50 -1.4
3,736,575 - BWI76_RS17980 0.68 +0.4
3,736,575 - BWI76_RS17980 0.68 -0.8
3,736,582 + BWI76_RS17980 0.69 +1.9
3,736,871 + -0.1
3,736,871 + +1.1
3,737,128 - BWI76_RS17985 0.48 +0.8
3,737,202 + BWI76_RS17985 0.63 -0.5
3,737,251 - BWI76_RS17985 0.72 -0.1
3,737,363 - -0.3
3,737,365 + +0.6
3,737,413 + +0.8
3,737,421 - -0.5
3,737,421 - +0.0
3,737,421 - -0.6
3,737,421 - -0.9
3,737,421 - -0.5
3,737,492 + +0.2
3,737,539 + -1.4
3,737,547 - +0.3
3,737,596 + +1.3

Or see this region's nucleotide sequence