Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17615

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17610 and BWI76_RS17615 are separated by 59 nucleotidesBWI76_RS17615 and BWI76_RS17620 are separated by 179 nucleotides BWI76_RS17610: BWI76_RS17610 - LysR family transcriptional regulator, at 3,658,719 to 3,659,612 _RS17610 BWI76_RS17615: BWI76_RS17615 - RNA pseudouridine synthase, at 3,659,672 to 3,660,358 _RS17615 BWI76_RS17620: BWI76_RS17620 - ABC transporter ATP-binding protein, at 3,660,538 to 3,661,626 _RS17620 Position (kb) 3659 3660 3661Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3658.703 kb on + strandat 3658.709 kb on - strandat 3658.714 kb on + strandat 3658.753 kb on + strandat 3658.755 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.762 kb on + strandat 3658.770 kb on - strandat 3658.770 kb on - strandat 3658.770 kb on - strandat 3658.770 kb on - strandat 3658.770 kb on - strandat 3658.772 kb on + strandat 3658.772 kb on + strandat 3658.772 kb on + strandat 3658.772 kb on + strandat 3658.780 kb on + strandat 3658.780 kb on + strandat 3658.788 kb on - strandat 3658.845 kb on + strand, within BWI76_RS17610at 3658.845 kb on + strand, within BWI76_RS17610at 3658.845 kb on + strand, within BWI76_RS17610at 3658.869 kb on + strand, within BWI76_RS17610at 3658.874 kb on + strand, within BWI76_RS17610at 3658.958 kb on - strand, within BWI76_RS17610at 3659.102 kb on + strand, within BWI76_RS17610at 3659.108 kb on + strand, within BWI76_RS17610at 3659.118 kb on + strand, within BWI76_RS17610at 3659.130 kb on - strand, within BWI76_RS17610at 3659.167 kb on + strand, within BWI76_RS17610at 3659.183 kb on + strand, within BWI76_RS17610at 3659.215 kb on + strandat 3659.220 kb on + strand, within BWI76_RS17610at 3659.247 kb on + strand, within BWI76_RS17610at 3659.255 kb on - strand, within BWI76_RS17610at 3659.255 kb on - strand, within BWI76_RS17610at 3659.257 kb on - strand, within BWI76_RS17610at 3659.283 kb on + strand, within BWI76_RS17610at 3659.314 kb on + strand, within BWI76_RS17610at 3659.323 kb on - strand, within BWI76_RS17610at 3659.339 kb on + strand, within BWI76_RS17610at 3659.340 kb on + strand, within BWI76_RS17610at 3659.348 kb on - strand, within BWI76_RS17610at 3659.370 kb on + strand, within BWI76_RS17610at 3659.385 kb on - strand, within BWI76_RS17610at 3659.675 kb on - strandat 3659.733 kb on + strandat 3659.938 kb on + strand, within BWI76_RS17615at 3660.052 kb on + strand, within BWI76_RS17615at 3660.222 kb on + strand, within BWI76_RS17615at 3660.298 kb on + strandat 3660.360 kb on - strandat 3660.387 kb on + strandat 3660.476 kb on + strandat 3660.476 kb on + strandat 3660.476 kb on + strandat 3660.477 kb on + strandat 3660.484 kb on + strandat 3660.485 kb on + strandat 3660.490 kb on + strandat 3660.490 kb on + strandat 3660.495 kb on + strandat 3660.501 kb on - strandat 3660.607 kb on - strandat 3660.628 kb on - strandat 3660.638 kb on + strandat 3660.683 kb on - strand, within BWI76_RS17620at 3660.698 kb on - strand, within BWI76_RS17620at 3660.728 kb on + strand, within BWI76_RS17620at 3660.736 kb on - strand, within BWI76_RS17620at 3661.137 kb on - strand, within BWI76_RS17620at 3661.172 kb on - strand, within BWI76_RS17620at 3661.335 kb on + strand, within BWI76_RS17620

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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3,658,703 + -0.3
3,658,709 - -1.1
3,658,714 + +0.6
3,658,753 + +0.9
3,658,755 + +1.5
3,658,762 + -0.6
3,658,762 + -1.1
3,658,762 + +0.2
3,658,762 + +3.5
3,658,762 + -0.4
3,658,762 + +0.3
3,658,762 + -1.3
3,658,762 + -0.0
3,658,762 + +0.7
3,658,762 + -1.1
3,658,762 + +0.4
3,658,762 + +0.2
3,658,762 + +1.2
3,658,762 + +0.4
3,658,762 + +1.1
3,658,762 + -2.4
3,658,762 + -0.7
3,658,762 + +1.0
3,658,770 - -0.7
3,658,770 - -1.7
3,658,770 - +0.5
3,658,770 - +0.7
3,658,770 - -0.1
3,658,772 + -0.0
3,658,772 + -0.7
3,658,772 + +0.7
3,658,772 + +0.2
3,658,780 + -0.6
3,658,780 + -0.2
3,658,788 - -1.7
3,658,845 + BWI76_RS17610 0.14 +0.3
3,658,845 + BWI76_RS17610 0.14 -1.3
3,658,845 + BWI76_RS17610 0.14 -0.8
3,658,869 + BWI76_RS17610 0.17 +0.5
3,658,874 + BWI76_RS17610 0.17 +0.1
3,658,958 - BWI76_RS17610 0.27 -0.1
3,659,102 + BWI76_RS17610 0.43 +0.9
3,659,108 + BWI76_RS17610 0.44 +1.7
3,659,118 + BWI76_RS17610 0.45 +1.1
3,659,130 - BWI76_RS17610 0.46 -0.5
3,659,167 + BWI76_RS17610 0.50 -0.2
3,659,183 + BWI76_RS17610 0.52 -1.6
3,659,215 + -0.7
3,659,220 + BWI76_RS17610 0.56 +0.6
3,659,247 + BWI76_RS17610 0.59 -1.1
3,659,255 - BWI76_RS17610 0.60 +0.5
3,659,255 - BWI76_RS17610 0.60 -0.5
3,659,257 - BWI76_RS17610 0.60 -0.1
3,659,283 + BWI76_RS17610 0.63 -0.6
3,659,314 + BWI76_RS17610 0.67 +0.4
3,659,323 - BWI76_RS17610 0.68 +0.4
3,659,339 + BWI76_RS17610 0.69 -0.9
3,659,340 + BWI76_RS17610 0.69 -0.4
3,659,348 - BWI76_RS17610 0.70 -1.2
3,659,370 + BWI76_RS17610 0.73 -1.1
3,659,385 - BWI76_RS17610 0.74 -2.2
3,659,675 - +0.7
3,659,733 + +1.1
3,659,938 + BWI76_RS17615 0.39 +0.4
3,660,052 + BWI76_RS17615 0.55 +1.5
3,660,222 + BWI76_RS17615 0.80 +0.7
3,660,298 + +1.2
3,660,360 - -0.6
3,660,387 + -1.4
3,660,476 + -0.1
3,660,476 + -0.5
3,660,476 + -0.4
3,660,477 + +0.8
3,660,484 + -0.3
3,660,485 + +0.5
3,660,490 + +0.1
3,660,490 + +1.0
3,660,495 + -0.4
3,660,501 - -0.1
3,660,607 - +1.1
3,660,628 - -1.1
3,660,638 + -0.6
3,660,683 - BWI76_RS17620 0.13 -0.2
3,660,698 - BWI76_RS17620 0.15 +0.7
3,660,728 + BWI76_RS17620 0.17 -1.4
3,660,736 - BWI76_RS17620 0.18 +0.6
3,661,137 - BWI76_RS17620 0.55 -1.8
3,661,172 - BWI76_RS17620 0.58 +1.4
3,661,335 + BWI76_RS17620 0.73 +0.3

Or see this region's nucleotide sequence