Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15565

Experiment: 2-Deoxyadenosine 4 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS15550 and BWI76_RS15555 are separated by 91 nucleotidesBWI76_RS15555 and BWI76_RS15560 overlap by 4 nucleotidesBWI76_RS15560 and BWI76_RS15565 are separated by 74 nucleotidesBWI76_RS15565 and BWI76_RS15570 are separated by 78 nucleotidesBWI76_RS15570 and BWI76_RS15575 are separated by 67 nucleotides BWI76_RS15550: BWI76_RS15550 - hypothetical protein, at 3,256,952 to 3,259,612 _RS15550 BWI76_RS15555: BWI76_RS15555 - hypothetical protein, at 3,259,704 to 3,260,174 _RS15555 BWI76_RS15560: BWI76_RS15560 - hypothetical protein, at 3,260,171 to 3,260,503 _RS15560 BWI76_RS15565: BWI76_RS15565 - hypothetical protein, at 3,260,578 to 3,260,790 _RS15565 BWI76_RS15570: BWI76_RS15570 - phage antirepressor Ant, at 3,260,869 to 3,261,642 _RS15570 BWI76_RS15575: BWI76_RS15575 - hypothetical protein, at 3,261,710 to 3,262,429 _RS15575 Position (kb) 3260 3261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3259.606 kb on + strandat 3259.607 kb on + strandat 3259.608 kb on + strandat 3259.608 kb on + strandat 3259.689 kb on + strandat 3259.708 kb on - strandat 3259.749 kb on + strandat 3259.757 kb on - strand, within BWI76_RS15555at 3259.757 kb on - strand, within BWI76_RS15555at 3259.757 kb on - strand, within BWI76_RS15555at 3259.757 kb on - strand, within BWI76_RS15555at 3259.757 kb on - strand, within BWI76_RS15555at 3259.765 kb on - strand, within BWI76_RS15555at 3259.776 kb on - strand, within BWI76_RS15555at 3259.776 kb on - strand, within BWI76_RS15555at 3259.790 kb on - strand, within BWI76_RS15555at 3259.848 kb on - strand, within BWI76_RS15555at 3259.889 kb on - strand, within BWI76_RS15555at 3259.891 kb on + strand, within BWI76_RS15555at 3259.901 kb on - strand, within BWI76_RS15555at 3259.935 kb on - strand, within BWI76_RS15555at 3259.985 kb on - strand, within BWI76_RS15555at 3260.007 kb on - strand, within BWI76_RS15555at 3260.007 kb on - strand, within BWI76_RS15555at 3260.024 kb on - strand, within BWI76_RS15555at 3260.024 kb on - strand, within BWI76_RS15555at 3260.043 kb on - strand, within BWI76_RS15555at 3260.069 kb on + strand, within BWI76_RS15555at 3260.077 kb on - strand, within BWI76_RS15555at 3260.077 kb on - strand, within BWI76_RS15555at 3260.184 kb on - strandat 3260.184 kb on - strandat 3260.241 kb on - strand, within BWI76_RS15560at 3260.248 kb on + strand, within BWI76_RS15560at 3260.256 kb on - strand, within BWI76_RS15560at 3260.256 kb on - strand, within BWI76_RS15560at 3260.267 kb on - strand, within BWI76_RS15560at 3260.269 kb on + strand, within BWI76_RS15560at 3260.311 kb on - strand, within BWI76_RS15560at 3260.339 kb on + strand, within BWI76_RS15560at 3260.339 kb on + strand, within BWI76_RS15560at 3260.339 kb on + strand, within BWI76_RS15560at 3260.339 kb on + strand, within BWI76_RS15560at 3260.339 kb on + strand, within BWI76_RS15560at 3260.339 kb on + strand, within BWI76_RS15560at 3260.347 kb on - strand, within BWI76_RS15560at 3260.347 kb on - strand, within BWI76_RS15560at 3260.347 kb on - strand, within BWI76_RS15560at 3260.347 kb on - strand, within BWI76_RS15560at 3260.347 kb on - strand, within BWI76_RS15560at 3260.347 kb on - strand, within BWI76_RS15560at 3260.348 kb on - strand, within BWI76_RS15560at 3260.496 kb on - strandat 3260.552 kb on - strandat 3260.583 kb on - strandat 3260.621 kb on - strand, within BWI76_RS15565at 3260.741 kb on - strand, within BWI76_RS15565at 3260.741 kb on - strand, within BWI76_RS15565at 3260.842 kb on - strandat 3260.854 kb on + strandat 3260.867 kb on + strandat 3260.875 kb on - strandat 3260.929 kb on - strandat 3261.039 kb on - strand, within BWI76_RS15570at 3261.283 kb on - strand, within BWI76_RS15570at 3261.526 kb on + strand, within BWI76_RS15570at 3261.534 kb on - strand, within BWI76_RS15570at 3261.747 kb on - strandat 3261.755 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
remove
3,259,606 + -1.1
3,259,607 + -2.2
3,259,608 + +0.3
3,259,608 + +0.1
3,259,689 + -0.3
3,259,708 - -1.4
3,259,749 + +1.8
3,259,757 - BWI76_RS15555 0.11 +0.1
3,259,757 - BWI76_RS15555 0.11 -0.6
3,259,757 - BWI76_RS15555 0.11 +0.1
3,259,757 - BWI76_RS15555 0.11 +0.6
3,259,757 - BWI76_RS15555 0.11 -2.8
3,259,765 - BWI76_RS15555 0.13 -0.1
3,259,776 - BWI76_RS15555 0.15 -0.6
3,259,776 - BWI76_RS15555 0.15 -1.9
3,259,790 - BWI76_RS15555 0.18 +1.3
3,259,848 - BWI76_RS15555 0.31 +0.2
3,259,889 - BWI76_RS15555 0.39 -1.7
3,259,891 + BWI76_RS15555 0.40 +1.5
3,259,901 - BWI76_RS15555 0.42 -1.1
3,259,935 - BWI76_RS15555 0.49 -0.5
3,259,985 - BWI76_RS15555 0.60 +0.6
3,260,007 - BWI76_RS15555 0.64 +0.3
3,260,007 - BWI76_RS15555 0.64 +0.8
3,260,024 - BWI76_RS15555 0.68 -0.9
3,260,024 - BWI76_RS15555 0.68 -0.4
3,260,043 - BWI76_RS15555 0.72 -1.6
3,260,069 + BWI76_RS15555 0.77 +0.3
3,260,077 - BWI76_RS15555 0.79 -0.0
3,260,077 - BWI76_RS15555 0.79 -1.1
3,260,184 - +0.3
3,260,184 - +0.1
3,260,241 - BWI76_RS15560 0.21 +0.5
3,260,248 + BWI76_RS15560 0.23 -0.1
3,260,256 - BWI76_RS15560 0.26 -0.3
3,260,256 - BWI76_RS15560 0.26 -1.2
3,260,267 - BWI76_RS15560 0.29 -0.8
3,260,269 + BWI76_RS15560 0.29 -2.9
3,260,311 - BWI76_RS15560 0.42 -2.1
3,260,339 + BWI76_RS15560 0.50 -3.9
3,260,339 + BWI76_RS15560 0.50 -0.5
3,260,339 + BWI76_RS15560 0.50 +1.4
3,260,339 + BWI76_RS15560 0.50 -0.7
3,260,339 + BWI76_RS15560 0.50 -1.1
3,260,339 + BWI76_RS15560 0.50 -1.4
3,260,347 - BWI76_RS15560 0.53 -3.0
3,260,347 - BWI76_RS15560 0.53 -0.1
3,260,347 - BWI76_RS15560 0.53 +0.5
3,260,347 - BWI76_RS15560 0.53 +0.7
3,260,347 - BWI76_RS15560 0.53 +0.3
3,260,347 - BWI76_RS15560 0.53 +4.4
3,260,348 - BWI76_RS15560 0.53 -0.8
3,260,496 - +0.1
3,260,552 - -0.4
3,260,583 - +2.0
3,260,621 - BWI76_RS15565 0.20 -1.1
3,260,741 - BWI76_RS15565 0.77 -1.5
3,260,741 - BWI76_RS15565 0.77 -0.7
3,260,842 - +0.6
3,260,854 + -0.7
3,260,867 + -0.0
3,260,875 - -0.4
3,260,929 - +0.3
3,261,039 - BWI76_RS15570 0.22 -1.3
3,261,283 - BWI76_RS15570 0.53 -0.4
3,261,526 + BWI76_RS15570 0.85 -0.3
3,261,534 - BWI76_RS15570 0.86 +0.3
3,261,747 - -1.0
3,261,755 + -1.8

Or see this region's nucleotide sequence