Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14105

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14100 and BWI76_RS14105 are separated by 120 nucleotidesBWI76_RS14105 and BWI76_RS14110 are separated by 104 nucleotidesBWI76_RS14110 and BWI76_RS14115 are separated by 79 nucleotides BWI76_RS14100: BWI76_RS14100 - diguanylate phosphodiesterase, at 2,947,369 to 2,948,907 _RS14100 BWI76_RS14105: BWI76_RS14105 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 2,949,028 to 2,949,639 _RS14105 BWI76_RS14110: BWI76_RS14110 - C-lysozyme inhibitor, at 2,949,744 to 2,950,187 _RS14110 BWI76_RS14115: BWI76_RS14115 - YqaE/Pmp3 family membrane protein, at 2,950,267 to 2,950,428 _RS14115 Position (kb) 2949 2950Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2948.068 kb on + strand, within BWI76_RS14100at 2948.147 kb on - strand, within BWI76_RS14100at 2948.166 kb on + strand, within BWI76_RS14100at 2948.227 kb on + strand, within BWI76_RS14100at 2948.235 kb on - strand, within BWI76_RS14100at 2948.237 kb on + strand, within BWI76_RS14100at 2948.340 kb on + strand, within BWI76_RS14100at 2948.348 kb on - strand, within BWI76_RS14100at 2948.396 kb on - strandat 2948.461 kb on - strand, within BWI76_RS14100at 2948.486 kb on + strand, within BWI76_RS14100at 2948.498 kb on + strand, within BWI76_RS14100at 2948.545 kb on - strand, within BWI76_RS14100at 2948.556 kb on + strand, within BWI76_RS14100at 2948.611 kb on + strand, within BWI76_RS14100at 2948.611 kb on + strand, within BWI76_RS14100at 2948.756 kb on - strandat 2948.776 kb on + strandat 2948.804 kb on + strandat 2948.812 kb on - strandat 2948.821 kb on + strandat 2948.822 kb on - strandat 2948.828 kb on - strandat 2948.829 kb on - strandat 2948.879 kb on + strandat 2948.887 kb on - strandat 2948.902 kb on - strandat 2948.906 kb on + strandat 2948.959 kb on + strandat 2949.018 kb on + strandat 2949.021 kb on + strandat 2949.034 kb on - strandat 2949.035 kb on - strandat 2949.035 kb on - strandat 2949.040 kb on - strandat 2949.082 kb on + strandat 2949.125 kb on - strand, within BWI76_RS14105at 2949.175 kb on - strand, within BWI76_RS14105at 2949.186 kb on + strand, within BWI76_RS14105at 2949.271 kb on - strand, within BWI76_RS14105at 2949.318 kb on - strand, within BWI76_RS14105at 2949.443 kb on - strand, within BWI76_RS14105at 2949.489 kb on - strand, within BWI76_RS14105at 2949.850 kb on - strand, within BWI76_RS14110at 2949.850 kb on - strand, within BWI76_RS14110at 2949.850 kb on - strand, within BWI76_RS14110at 2949.962 kb on - strand, within BWI76_RS14110at 2950.045 kb on - strand, within BWI76_RS14110at 2950.123 kb on - strand, within BWI76_RS14110at 2950.186 kb on - strandat 2950.197 kb on - strandat 2950.197 kb on - strandat 2950.197 kb on - strandat 2950.258 kb on - strandat 2950.313 kb on - strand, within BWI76_RS14115at 2950.313 kb on - strandat 2950.313 kb on - strand, within BWI76_RS14115at 2950.357 kb on + strand, within BWI76_RS14115at 2950.363 kb on + strand, within BWI76_RS14115at 2950.363 kb on + strand, within BWI76_RS14115at 2950.365 kb on - strand, within BWI76_RS14115at 2950.365 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.371 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.372 kb on - strand, within BWI76_RS14115at 2950.375 kb on - strand, within BWI76_RS14115at 2950.382 kb on - strand, within BWI76_RS14115at 2950.382 kb on - strand, within BWI76_RS14115at 2950.382 kb on - strand, within BWI76_RS14115at 2950.382 kb on - strand, within BWI76_RS14115at 2950.438 kb on - strandat 2950.461 kb on - strandat 2950.595 kb on - strandat 2950.629 kb on + strandat 2950.631 kb on + strandat 2950.631 kb on + strandat 2950.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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2,948,068 + BWI76_RS14100 0.45 -0.1
2,948,147 - BWI76_RS14100 0.51 +0.5
2,948,166 + BWI76_RS14100 0.52 +0.6
2,948,227 + BWI76_RS14100 0.56 +0.6
2,948,235 - BWI76_RS14100 0.56 -0.5
2,948,237 + BWI76_RS14100 0.56 +0.1
2,948,340 + BWI76_RS14100 0.63 -1.2
2,948,348 - BWI76_RS14100 0.64 -0.6
2,948,396 - -0.7
2,948,461 - BWI76_RS14100 0.71 -0.9
2,948,486 + BWI76_RS14100 0.73 -1.2
2,948,498 + BWI76_RS14100 0.73 -1.9
2,948,545 - BWI76_RS14100 0.76 +0.2
2,948,556 + BWI76_RS14100 0.77 -0.5
2,948,611 + BWI76_RS14100 0.81 -0.7
2,948,611 + BWI76_RS14100 0.81 +0.1
2,948,756 - -0.0
2,948,776 + +0.1
2,948,804 + -0.7
2,948,812 - +1.2
2,948,821 + -0.7
2,948,822 - +0.6
2,948,828 - -0.7
2,948,829 - -0.8
2,948,879 + -0.2
2,948,887 - -2.8
2,948,902 - +0.9
2,948,906 + -0.3
2,948,959 + -3.6
2,949,018 + -0.1
2,949,021 + -0.4
2,949,034 - +0.7
2,949,035 - +0.0
2,949,035 - +0.4
2,949,040 - +0.4
2,949,082 + +1.7
2,949,125 - BWI76_RS14105 0.16 +1.6
2,949,175 - BWI76_RS14105 0.24 +1.2
2,949,186 + BWI76_RS14105 0.26 +1.1
2,949,271 - BWI76_RS14105 0.40 +1.1
2,949,318 - BWI76_RS14105 0.47 -0.2
2,949,443 - BWI76_RS14105 0.68 +0.2
2,949,489 - BWI76_RS14105 0.75 +0.6
2,949,850 - BWI76_RS14110 0.24 +0.5
2,949,850 - BWI76_RS14110 0.24 -0.3
2,949,850 - BWI76_RS14110 0.24 -0.4
2,949,962 - BWI76_RS14110 0.49 +0.4
2,950,045 - BWI76_RS14110 0.68 +0.5
2,950,123 - BWI76_RS14110 0.85 +1.1
2,950,186 - -1.1
2,950,197 - -0.6
2,950,197 - +1.6
2,950,197 - -0.3
2,950,258 - +0.0
2,950,313 - BWI76_RS14115 0.28 -0.1
2,950,313 - +0.9
2,950,313 - BWI76_RS14115 0.28 -0.1
2,950,357 + BWI76_RS14115 0.56 +0.6
2,950,363 + BWI76_RS14115 0.59 +0.9
2,950,363 + BWI76_RS14115 0.59 -0.0
2,950,365 - BWI76_RS14115 0.60 -0.5
2,950,365 - BWI76_RS14115 0.60 -2.0
2,950,371 - BWI76_RS14115 0.64 +0.3
2,950,371 - BWI76_RS14115 0.64 +0.6
2,950,371 - BWI76_RS14115 0.64 +0.4
2,950,371 - BWI76_RS14115 0.64 +0.5
2,950,371 - BWI76_RS14115 0.64 -0.4
2,950,371 - BWI76_RS14115 0.64 -0.5
2,950,372 - BWI76_RS14115 0.65 -1.8
2,950,372 - BWI76_RS14115 0.65 +0.2
2,950,372 - BWI76_RS14115 0.65 -1.9
2,950,372 - BWI76_RS14115 0.65 -0.4
2,950,372 - BWI76_RS14115 0.65 +0.8
2,950,372 - BWI76_RS14115 0.65 -1.2
2,950,372 - BWI76_RS14115 0.65 +0.3
2,950,372 - BWI76_RS14115 0.65 +1.3
2,950,372 - BWI76_RS14115 0.65 +1.8
2,950,372 - BWI76_RS14115 0.65 +1.1
2,950,372 - BWI76_RS14115 0.65 +0.2
2,950,372 - BWI76_RS14115 0.65 +0.1
2,950,372 - BWI76_RS14115 0.65 -0.1
2,950,372 - BWI76_RS14115 0.65 -0.9
2,950,372 - BWI76_RS14115 0.65 +0.9
2,950,372 - BWI76_RS14115 0.65 +0.2
2,950,372 - BWI76_RS14115 0.65 -0.0
2,950,372 - BWI76_RS14115 0.65 -1.4
2,950,372 - BWI76_RS14115 0.65 +0.1
2,950,372 - BWI76_RS14115 0.65 +0.9
2,950,375 - BWI76_RS14115 0.67 +0.1
2,950,382 - BWI76_RS14115 0.71 -0.0
2,950,382 - BWI76_RS14115 0.71 +3.5
2,950,382 - BWI76_RS14115 0.71 +0.2
2,950,382 - BWI76_RS14115 0.71 -0.7
2,950,438 - +0.2
2,950,461 - -0.1
2,950,595 - -0.3
2,950,629 + -0.1
2,950,631 + +0.5
2,950,631 + -1.3
2,950,639 - -0.7

Or see this region's nucleotide sequence