Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13810

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13805 and BWI76_RS13810 are separated by 200 nucleotidesBWI76_RS13810 and BWI76_RS13815 are separated by 37 nucleotides BWI76_RS13805: BWI76_RS13805 - inorganic diphosphatase, at 2,879,760 to 2,880,359 _RS13805 BWI76_RS13810: BWI76_RS13810 - MarR family transcriptional regulator, at 2,880,560 to 2,881,516 _RS13810 BWI76_RS13815: BWI76_RS13815 - ABC transporter, at 2,881,554 to 2,883,266 _RS13815 Position (kb) 2880 2881 2882Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2879.566 kb on - strandat 2880.291 kb on - strand, within BWI76_RS13805at 2880.291 kb on - strand, within BWI76_RS13805at 2880.417 kb on + strandat 2880.422 kb on + strandat 2880.450 kb on + strandat 2880.671 kb on + strand, within BWI76_RS13810at 2880.786 kb on - strand, within BWI76_RS13810at 2880.800 kb on + strand, within BWI76_RS13810at 2880.882 kb on - strand, within BWI76_RS13810at 2880.927 kb on - strand, within BWI76_RS13810at 2881.072 kb on + strand, within BWI76_RS13810at 2881.107 kb on - strand, within BWI76_RS13810at 2881.415 kb on - strand, within BWI76_RS13810at 2881.435 kb on + strandat 2881.506 kb on + strandat 2881.594 kb on - strandat 2881.775 kb on - strand, within BWI76_RS13815at 2882.063 kb on - strand, within BWI76_RS13815

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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2,879,566 - +1.1
2,880,291 - BWI76_RS13805 0.89 -0.9
2,880,291 - BWI76_RS13805 0.89 -0.4
2,880,417 + -1.3
2,880,422 + +1.0
2,880,450 + -1.0
2,880,671 + BWI76_RS13810 0.12 +1.7
2,880,786 - BWI76_RS13810 0.24 +0.7
2,880,800 + BWI76_RS13810 0.25 +2.9
2,880,882 - BWI76_RS13810 0.34 +0.8
2,880,927 - BWI76_RS13810 0.38 +1.7
2,881,072 + BWI76_RS13810 0.54 +0.7
2,881,107 - BWI76_RS13810 0.57 +0.9
2,881,415 - BWI76_RS13810 0.89 -3.3
2,881,435 + -0.6
2,881,506 + -0.8
2,881,594 - +0.1
2,881,775 - BWI76_RS13815 0.13 +0.2
2,882,063 - BWI76_RS13815 0.30 +0.3

Or see this region's nucleotide sequence