Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12910

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12905 and BWI76_RS12910 are separated by 348 nucleotidesBWI76_RS12910 and BWI76_RS12915 are separated by 17 nucleotides BWI76_RS12905: BWI76_RS12905 - LysR family transcriptional regulator, at 2,688,620 to 2,689,588 _RS12905 BWI76_RS12910: BWI76_RS12910 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 2,689,937 to 2,690,743 _RS12910 BWI76_RS12915: BWI76_RS12915 - 4-hydroxyphenylacetate permease, at 2,690,761 to 2,692,134 _RS12915 Position (kb) 2689 2690 2691Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2688.981 kb on + strand, within BWI76_RS12905at 2688.989 kb on - strand, within BWI76_RS12905at 2688.989 kb on - strand, within BWI76_RS12905at 2689.008 kb on - strand, within BWI76_RS12905at 2689.014 kb on + strand, within BWI76_RS12905at 2689.016 kb on + strand, within BWI76_RS12905at 2689.024 kb on + strand, within BWI76_RS12905at 2689.028 kb on - strand, within BWI76_RS12905at 2689.031 kb on + strand, within BWI76_RS12905at 2689.039 kb on + strand, within BWI76_RS12905at 2689.039 kb on + strand, within BWI76_RS12905at 2689.047 kb on - strand, within BWI76_RS12905at 2689.047 kb on - strand, within BWI76_RS12905at 2689.047 kb on - strand, within BWI76_RS12905at 2689.047 kb on - strand, within BWI76_RS12905at 2689.106 kb on - strand, within BWI76_RS12905at 2689.106 kb on - strand, within BWI76_RS12905at 2689.106 kb on - strand, within BWI76_RS12905at 2689.108 kb on + strand, within BWI76_RS12905at 2689.108 kb on + strand, within BWI76_RS12905at 2689.119 kb on + strand, within BWI76_RS12905at 2689.121 kb on + strand, within BWI76_RS12905at 2689.126 kb on + strand, within BWI76_RS12905at 2689.126 kb on + strand, within BWI76_RS12905at 2689.127 kb on - strand, within BWI76_RS12905at 2689.131 kb on + strand, within BWI76_RS12905at 2689.207 kb on + strand, within BWI76_RS12905at 2689.265 kb on + strand, within BWI76_RS12905at 2689.369 kb on - strandat 2689.506 kb on + strandat 2689.509 kb on - strandat 2689.539 kb on - strandat 2689.751 kb on - strandat 2689.758 kb on - strandat 2689.870 kb on + strandat 2689.870 kb on + strandat 2689.870 kb on + strandat 2689.870 kb on + strandat 2689.870 kb on + strandat 2689.878 kb on - strandat 2689.878 kb on - strandat 2689.883 kb on + strandat 2689.911 kb on - strandat 2689.920 kb on + strandat 2689.920 kb on + strandat 2689.928 kb on - strandat 2690.001 kb on + strandat 2690.010 kb on + strandat 2690.017 kb on + strandat 2690.067 kb on + strand, within BWI76_RS12910at 2690.149 kb on - strand, within BWI76_RS12910at 2690.251 kb on - strand, within BWI76_RS12910at 2690.780 kb on - strandat 2690.823 kb on + strandat 2690.978 kb on - strand, within BWI76_RS12915at 2691.044 kb on - strand, within BWI76_RS12915at 2691.073 kb on + strand, within BWI76_RS12915at 2691.073 kb on + strand, within BWI76_RS12915at 2691.369 kb on + strand, within BWI76_RS12915at 2691.714 kb on + strand, within BWI76_RS12915

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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2,688,981 + BWI76_RS12905 0.37 +0.3
2,688,989 - BWI76_RS12905 0.38 +0.0
2,688,989 - BWI76_RS12905 0.38 +0.6
2,689,008 - BWI76_RS12905 0.40 +0.2
2,689,014 + BWI76_RS12905 0.41 -0.2
2,689,016 + BWI76_RS12905 0.41 +0.2
2,689,024 + BWI76_RS12905 0.42 +1.0
2,689,028 - BWI76_RS12905 0.42 +0.7
2,689,031 + BWI76_RS12905 0.42 +0.0
2,689,039 + BWI76_RS12905 0.43 -1.6
2,689,039 + BWI76_RS12905 0.43 +0.3
2,689,047 - BWI76_RS12905 0.44 -1.7
2,689,047 - BWI76_RS12905 0.44 +0.5
2,689,047 - BWI76_RS12905 0.44 -0.5
2,689,047 - BWI76_RS12905 0.44 -0.9
2,689,106 - BWI76_RS12905 0.50 -0.1
2,689,106 - BWI76_RS12905 0.50 +0.6
2,689,106 - BWI76_RS12905 0.50 +1.4
2,689,108 + BWI76_RS12905 0.50 -0.9
2,689,108 + BWI76_RS12905 0.50 -3.9
2,689,119 + BWI76_RS12905 0.51 +1.8
2,689,121 + BWI76_RS12905 0.52 -1.9
2,689,126 + BWI76_RS12905 0.52 -0.3
2,689,126 + BWI76_RS12905 0.52 +2.2
2,689,127 - BWI76_RS12905 0.52 -1.1
2,689,131 + BWI76_RS12905 0.53 +0.3
2,689,207 + BWI76_RS12905 0.61 -0.1
2,689,265 + BWI76_RS12905 0.67 +1.0
2,689,369 - +2.0
2,689,506 + -0.6
2,689,509 - +0.5
2,689,539 - -0.6
2,689,751 - -0.8
2,689,758 - -0.0
2,689,870 + +0.4
2,689,870 + +0.2
2,689,870 + +2.5
2,689,870 + -1.3
2,689,870 + +0.6
2,689,878 - +1.0
2,689,878 - -2.7
2,689,883 + -0.0
2,689,911 - -0.9
2,689,920 + -0.3
2,689,920 + -1.8
2,689,928 - +0.8
2,690,001 + +0.7
2,690,010 + +0.3
2,690,017 + +0.1
2,690,067 + BWI76_RS12910 0.16 -3.5
2,690,149 - BWI76_RS12910 0.26 -0.8
2,690,251 - BWI76_RS12910 0.39 -1.0
2,690,780 - +0.7
2,690,823 + +0.5
2,690,978 - BWI76_RS12915 0.16 -0.2
2,691,044 - BWI76_RS12915 0.21 +0.4
2,691,073 + BWI76_RS12915 0.23 -0.6
2,691,073 + BWI76_RS12915 0.23 +0.5
2,691,369 + BWI76_RS12915 0.44 -0.1
2,691,714 + BWI76_RS12915 0.69 -0.2

Or see this region's nucleotide sequence