Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11820

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11810 and BWI76_RS11815 are separated by 97 nucleotidesBWI76_RS11815 and BWI76_RS11820 are separated by 214 nucleotidesBWI76_RS11820 and BWI76_RS11825 are separated by 121 nucleotides BWI76_RS11810: BWI76_RS11810 - outer membrane protein OmpW, at 2,484,371 to 2,485,009 _RS11810 BWI76_RS11815: BWI76_RS11815 - hypothetical protein, at 2,485,107 to 2,485,352 _RS11815 BWI76_RS11820: BWI76_RS11820 - short-chain dehydrogenase/reductase SDR, at 2,485,567 to 2,486,271 _RS11820 BWI76_RS11825: BWI76_RS11825 - LysR family transcriptional regulator, at 2,486,393 to 2,487,292 _RS11825 Position (kb) 2485 2486 2487Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2484.588 kb on + strand, within BWI76_RS11810at 2484.801 kb on + strand, within BWI76_RS11810at 2485.030 kb on + strandat 2485.279 kb on + strand, within BWI76_RS11815at 2485.498 kb on - strandat 2486.168 kb on + strand, within BWI76_RS11820at 2486.215 kb on - strandat 2486.317 kb on + strandat 2486.328 kb on + strandat 2486.423 kb on + strandat 2486.545 kb on + strand, within BWI76_RS11825at 2486.553 kb on - strand, within BWI76_RS11825at 2486.633 kb on + strand, within BWI76_RS11825at 2486.977 kb on + strand, within BWI76_RS11825

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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2,484,588 + BWI76_RS11810 0.34 -2.2
2,484,801 + BWI76_RS11810 0.67 -0.7
2,485,030 + +3.3
2,485,279 + BWI76_RS11815 0.70 +0.2
2,485,498 - +0.6
2,486,168 + BWI76_RS11820 0.85 +0.8
2,486,215 - -0.9
2,486,317 + -2.6
2,486,328 + +0.2
2,486,423 + -0.6
2,486,545 + BWI76_RS11825 0.17 -0.8
2,486,553 - BWI76_RS11825 0.18 +0.3
2,486,633 + BWI76_RS11825 0.27 -0.2
2,486,977 + BWI76_RS11825 0.65 +0.5

Or see this region's nucleotide sequence