Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11805

Experiment: 2-Deoxyadenosine 4 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS11795 and BWI76_RS11800 are separated by 230 nucleotidesBWI76_RS11800 and BWI76_RS11805 are separated by 52 nucleotidesBWI76_RS11805 and BWI76_RS11810 are separated by 313 nucleotides BWI76_RS11795: BWI76_RS11795 - TonB-dependent siderophore receptor, at 2,480,311 to 2,482,491 _RS11795 BWI76_RS11800: BWI76_RS11800 - intracellular septation protein A, at 2,482,722 to 2,483,261 _RS11800 BWI76_RS11805: BWI76_RS11805 - hypothetical protein, at 2,483,314 to 2,484,057 _RS11805 BWI76_RS11810: BWI76_RS11810 - outer membrane protein OmpW, at 2,484,371 to 2,485,009 _RS11810 Position (kb) 2483 2484 2485Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2482.339 kb on - strandat 2483.339 kb on - strandat 2483.407 kb on - strand, within BWI76_RS11805at 2483.509 kb on + strand, within BWI76_RS11805at 2483.919 kb on + strand, within BWI76_RS11805at 2483.952 kb on - strand, within BWI76_RS11805at 2484.066 kb on - strandat 2484.120 kb on + strandat 2484.126 kb on - strandat 2484.197 kb on + strandat 2484.323 kb on + strandat 2484.521 kb on - strand, within BWI76_RS11810at 2484.588 kb on + strand, within BWI76_RS11810at 2484.801 kb on + strand, within BWI76_RS11810at 2485.030 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
remove
2,482,339 - +1.5
2,483,339 - +0.1
2,483,407 - BWI76_RS11805 0.12 +0.9
2,483,509 + BWI76_RS11805 0.26 +0.2
2,483,919 + BWI76_RS11805 0.81 +1.4
2,483,952 - BWI76_RS11805 0.86 +0.1
2,484,066 - +0.4
2,484,120 + -0.3
2,484,126 - +0.9
2,484,197 + -0.2
2,484,323 + -0.1
2,484,521 - BWI76_RS11810 0.23 -1.0
2,484,588 + BWI76_RS11810 0.34 -2.2
2,484,801 + BWI76_RS11810 0.67 -0.7
2,485,030 + +3.3

Or see this region's nucleotide sequence