Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09195

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09185 and BWI76_RS09190 are separated by 79 nucleotidesBWI76_RS09190 and BWI76_RS09195 overlap by 23 nucleotidesBWI76_RS09195 and BWI76_RS09200 are separated by 10 nucleotidesBWI76_RS09200 and BWI76_RS09205 are separated by 11 nucleotides BWI76_RS09185: BWI76_RS09185 - integrase, at 1,939,457 to 1,940,503 _RS09185 BWI76_RS09190: BWI76_RS09190 - hypothetical protein, at 1,940,583 to 1,940,954 _RS09190 BWI76_RS09195: BWI76_RS09195 - N-acetyltransferase, at 1,940,932 to 1,942,005 _RS09195 BWI76_RS09200: BWI76_RS09200 - hypothetical protein, at 1,942,016 to 1,942,600 _RS09200 BWI76_RS09205: BWI76_RS09205 - phage repressor protein CI, at 1,942,612 to 1,943,172 _RS09205 Position (kb) 1940 1941 1942 1943Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1940.055 kb on + strand, within BWI76_RS09185at 1940.135 kb on - strand, within BWI76_RS09185at 1940.168 kb on - strand, within BWI76_RS09185at 1940.278 kb on + strand, within BWI76_RS09185at 1940.349 kb on + strand, within BWI76_RS09185at 1940.369 kb on - strand, within BWI76_RS09185at 1940.384 kb on - strand, within BWI76_RS09185at 1940.427 kb on + strandat 1940.457 kb on - strandat 1940.566 kb on + strandat 1940.571 kb on + strandat 1940.579 kb on - strandat 1940.579 kb on - strandat 1940.581 kb on + strandat 1940.581 kb on - strandat 1940.589 kb on - strandat 1940.606 kb on - strandat 1940.607 kb on - strandat 1940.616 kb on - strandat 1940.616 kb on - strandat 1940.616 kb on - strandat 1940.637 kb on - strand, within BWI76_RS09190at 1940.638 kb on - strand, within BWI76_RS09190at 1940.674 kb on - strand, within BWI76_RS09190at 1940.693 kb on - strand, within BWI76_RS09190at 1940.693 kb on - strand, within BWI76_RS09190at 1940.694 kb on - strand, within BWI76_RS09190at 1940.772 kb on - strand, within BWI76_RS09190at 1940.772 kb on - strand, within BWI76_RS09190at 1940.818 kb on - strand, within BWI76_RS09190at 1940.831 kb on - strand, within BWI76_RS09190at 1940.863 kb on - strand, within BWI76_RS09190at 1941.009 kb on - strandat 1941.512 kb on - strandat 1941.567 kb on - strand, within BWI76_RS09195at 1941.882 kb on - strand, within BWI76_RS09195at 1942.098 kb on + strand, within BWI76_RS09200at 1942.282 kb on - strand, within BWI76_RS09200at 1942.420 kb on + strand, within BWI76_RS09200at 1942.420 kb on + strand, within BWI76_RS09200at 1942.420 kb on + strand, within BWI76_RS09200at 1942.420 kb on + strand, within BWI76_RS09200at 1942.428 kb on - strand, within BWI76_RS09200at 1942.428 kb on - strand, within BWI76_RS09200at 1942.430 kb on + strand, within BWI76_RS09200at 1942.430 kb on + strand, within BWI76_RS09200at 1942.438 kb on - strand, within BWI76_RS09200at 1942.438 kb on - strand, within BWI76_RS09200at 1942.438 kb on - strand, within BWI76_RS09200at 1942.535 kb on + strand, within BWI76_RS09200at 1942.535 kb on + strand, within BWI76_RS09200at 1942.543 kb on - strandat 1942.543 kb on - strandat 1942.543 kb on - strandat 1942.543 kb on - strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on + strandat 1942.545 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.553 kb on - strandat 1942.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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1,940,055 + BWI76_RS09185 0.57 +0.5
1,940,135 - BWI76_RS09185 0.65 -0.4
1,940,168 - BWI76_RS09185 0.68 +0.5
1,940,278 + BWI76_RS09185 0.78 -0.2
1,940,349 + BWI76_RS09185 0.85 -1.2
1,940,369 - BWI76_RS09185 0.87 -0.1
1,940,384 - BWI76_RS09185 0.89 +0.9
1,940,427 + -0.3
1,940,457 - -0.0
1,940,566 + -0.3
1,940,571 + +1.3
1,940,579 - +1.1
1,940,579 - +0.5
1,940,581 + +0.6
1,940,581 - -0.6
1,940,589 - -0.5
1,940,606 - -2.7
1,940,607 - -1.3
1,940,616 - -0.6
1,940,616 - -1.0
1,940,616 - +0.1
1,940,637 - BWI76_RS09190 0.15 -0.6
1,940,638 - BWI76_RS09190 0.15 -0.6
1,940,674 - BWI76_RS09190 0.24 -0.1
1,940,693 - BWI76_RS09190 0.30 -2.3
1,940,693 - BWI76_RS09190 0.30 -0.6
1,940,694 - BWI76_RS09190 0.30 -1.8
1,940,772 - BWI76_RS09190 0.51 -2.7
1,940,772 - BWI76_RS09190 0.51 -1.6
1,940,818 - BWI76_RS09190 0.63 -1.6
1,940,831 - BWI76_RS09190 0.67 -1.0
1,940,863 - BWI76_RS09190 0.75 -0.0
1,941,009 - -2.0
1,941,512 - +2.0
1,941,567 - BWI76_RS09195 0.59 +1.3
1,941,882 - BWI76_RS09195 0.88 +0.7
1,942,098 + BWI76_RS09200 0.14 -0.8
1,942,282 - BWI76_RS09200 0.45 +1.3
1,942,420 + BWI76_RS09200 0.69 +0.3
1,942,420 + BWI76_RS09200 0.69 -1.0
1,942,420 + BWI76_RS09200 0.69 +1.6
1,942,420 + BWI76_RS09200 0.69 -3.3
1,942,428 - BWI76_RS09200 0.70 +0.7
1,942,428 - BWI76_RS09200 0.70 -0.5
1,942,430 + BWI76_RS09200 0.71 -1.1
1,942,430 + BWI76_RS09200 0.71 +1.0
1,942,438 - BWI76_RS09200 0.72 -4.2
1,942,438 - BWI76_RS09200 0.72 +0.8
1,942,438 - BWI76_RS09200 0.72 +0.4
1,942,535 + BWI76_RS09200 0.89 -1.0
1,942,535 + BWI76_RS09200 0.89 +2.5
1,942,543 - -0.2
1,942,543 - -2.0
1,942,543 - +0.9
1,942,543 - +1.2
1,942,545 + -2.3
1,942,545 + -1.0
1,942,545 + +0.2
1,942,545 + +0.6
1,942,545 + -1.2
1,942,545 + -0.6
1,942,545 + +0.6
1,942,545 - +0.2
1,942,553 - +1.8
1,942,553 - +1.0
1,942,553 - +1.1
1,942,553 - -3.8
1,942,553 - -1.3
1,942,553 - +0.2
1,942,553 - +1.4
1,942,553 - +0.6
1,942,553 - -1.5
1,942,553 - -1.2
1,942,553 - +0.9
1,942,553 - -1.9
1,942,553 - -0.1
1,942,553 - -3.6
1,942,589 - +0.2

Or see this region's nucleotide sequence