Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08585

Experiment: 2-Deoxyadenosine 4 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS08580 and BWI76_RS08585 are separated by 35 nucleotidesBWI76_RS08585 and BWI76_RS08590 overlap by 4 nucleotides BWI76_RS08580: BWI76_RS08580 - quinolinate synthetase, at 1,810,337 to 1,811,380 _RS08580 BWI76_RS08585: BWI76_RS08585 - nicotinamide riboside transporter PnuC, at 1,811,416 to 1,812,135 _RS08585 BWI76_RS08590: BWI76_RS08590 - zinc transporter ZitB, at 1,812,132 to 1,813,076 _RS08590 Position (kb) 1811 1812 1813Strain fitness (log2 ratio) -1 0 1 2 3at 1810.504 kb on - strand, within BWI76_RS08580at 1810.932 kb on + strand, within BWI76_RS08580at 1811.226 kb on + strand, within BWI76_RS08580at 1811.471 kb on + strandat 1811.481 kb on + strandat 1811.667 kb on - strand, within BWI76_RS08585at 1811.805 kb on - strand, within BWI76_RS08585at 1811.846 kb on + strand, within BWI76_RS08585at 1812.441 kb on - strand, within BWI76_RS08590at 1812.443 kb on - strand, within BWI76_RS08590at 1812.462 kb on - strand, within BWI76_RS08590at 1812.488 kb on - strand, within BWI76_RS08590at 1812.512 kb on + strand, within BWI76_RS08590at 1812.678 kb on - strand, within BWI76_RS08590at 1812.988 kb on - strandat 1813.082 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
remove
1,810,504 - BWI76_RS08580 0.16 -0.0
1,810,932 + BWI76_RS08580 0.57 -0.3
1,811,226 + BWI76_RS08580 0.85 +0.7
1,811,471 + +0.6
1,811,481 + +0.1
1,811,667 - BWI76_RS08585 0.35 +1.2
1,811,805 - BWI76_RS08585 0.54 +0.4
1,811,846 + BWI76_RS08585 0.60 +1.6
1,812,441 - BWI76_RS08590 0.33 -0.6
1,812,443 - BWI76_RS08590 0.33 +0.2
1,812,462 - BWI76_RS08590 0.35 +1.1
1,812,488 - BWI76_RS08590 0.38 +0.3
1,812,512 + BWI76_RS08590 0.40 -1.7
1,812,678 - BWI76_RS08590 0.58 +3.3
1,812,988 - -0.2
1,813,082 + -0.9

Or see this region's nucleotide sequence