Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06800

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06790 and BWI76_RS06795 are separated by 36 nucleotidesBWI76_RS06795 and BWI76_RS06800 are separated by 66 nucleotidesBWI76_RS06800 and BWI76_RS06805 are separated by 14 nucleotidesBWI76_RS06805 and BWI76_RS06810 are separated by 69 nucleotides BWI76_RS06790: BWI76_RS06790 - mechanosensitive channel MscK, at 1,424,129 to 1,427,470 _RS06790 BWI76_RS06795: BWI76_RS06795 - hypothetical protein, at 1,427,507 to 1,428,067 _RS06795 BWI76_RS06800: BWI76_RS06800 - DUF2496 domain-containing protein, at 1,428,134 to 1,428,307 _RS06800 BWI76_RS06805: BWI76_RS06805 - primosomal replication protein N'', at 1,428,322 to 1,428,849 _RS06805 BWI76_RS06810: BWI76_RS06810 - hypothetical protein, at 1,428,919 to 1,429,296 _RS06810 Position (kb) 1428 1429Strain fitness (log2 ratio) -2 -1 0 1at 1427.169 kb on - strandat 1427.169 kb on - strandat 1427.176 kb on + strandat 1427.333 kb on + strandat 1427.341 kb on - strandat 1427.442 kb on - strandat 1427.707 kb on + strand, within BWI76_RS06795at 1427.840 kb on + strand, within BWI76_RS06795at 1427.848 kb on - strand, within BWI76_RS06795at 1427.871 kb on + strand, within BWI76_RS06795at 1427.879 kb on - strand, within BWI76_RS06795at 1428.046 kb on + strandat 1428.274 kb on + strand, within BWI76_RS06800at 1428.450 kb on - strand, within BWI76_RS06805at 1428.556 kb on - strand, within BWI76_RS06805at 1428.707 kb on + strand, within BWI76_RS06805at 1428.879 kb on + strandat 1428.974 kb on - strand, within BWI76_RS06810at 1429.029 kb on + strand, within BWI76_RS06810at 1429.141 kb on - strand, within BWI76_RS06810at 1429.250 kb on - strand, within BWI76_RS06810at 1429.290 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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1,427,169 - -0.6
1,427,169 - -2.6
1,427,176 + -0.2
1,427,333 + -0.0
1,427,341 - +1.4
1,427,442 - -1.5
1,427,707 + BWI76_RS06795 0.36 +0.2
1,427,840 + BWI76_RS06795 0.59 +0.5
1,427,848 - BWI76_RS06795 0.61 +0.9
1,427,871 + BWI76_RS06795 0.65 +0.2
1,427,879 - BWI76_RS06795 0.66 +0.7
1,428,046 + +0.3
1,428,274 + BWI76_RS06800 0.80 +0.7
1,428,450 - BWI76_RS06805 0.24 -0.2
1,428,556 - BWI76_RS06805 0.44 -1.8
1,428,707 + BWI76_RS06805 0.73 -1.8
1,428,879 + +0.8
1,428,974 - BWI76_RS06810 0.15 -1.5
1,429,029 + BWI76_RS06810 0.29 -1.0
1,429,141 - BWI76_RS06810 0.59 +0.7
1,429,250 - BWI76_RS06810 0.88 +0.3
1,429,290 + +1.2

Or see this region's nucleotide sequence