Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05925

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05915 and BWI76_RS05920 are separated by 152 nucleotidesBWI76_RS05920 and BWI76_RS05925 are separated by 60 nucleotidesBWI76_RS05925 and BWI76_RS05930 are separated by 25 nucleotides BWI76_RS05915: BWI76_RS05915 - helix-turn-helix transcriptional regulator, at 1,243,472 to 1,244,014 _RS05915 BWI76_RS05920: BWI76_RS05920 - fimbrillin MatB, at 1,244,167 to 1,244,754 _RS05920 BWI76_RS05925: BWI76_RS05925 - hypothetical protein, at 1,244,815 to 1,245,483 _RS05925 BWI76_RS05930: BWI76_RS05930 - hypothetical protein, at 1,245,509 to 1,248,034 _RS05930 Position (kb) 1244 1245 1246Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1243.884 kb on + strandat 1243.949 kb on + strand, within BWI76_RS05915at 1243.957 kb on - strand, within BWI76_RS05915at 1243.963 kb on + strandat 1243.996 kb on + strandat 1244.011 kb on + strandat 1244.050 kb on + strandat 1244.050 kb on + strandat 1244.093 kb on + strandat 1244.093 kb on + strandat 1244.093 kb on + strandat 1244.093 kb on + strandat 1244.093 kb on + strandat 1244.093 kb on + strandat 1244.094 kb on + strandat 1244.094 kb on + strandat 1244.095 kb on + strandat 1244.098 kb on + strandat 1244.098 kb on + strandat 1244.098 kb on + strandat 1244.098 kb on + strandat 1244.098 kb on + strandat 1244.101 kb on - strandat 1244.101 kb on - strandat 1244.101 kb on - strandat 1244.106 kb on - strandat 1244.106 kb on - strandat 1244.117 kb on + strandat 1244.122 kb on + strandat 1244.122 kb on + strandat 1244.124 kb on + strandat 1244.128 kb on - strandat 1244.130 kb on - strandat 1244.131 kb on + strandat 1244.131 kb on + strandat 1244.186 kb on + strandat 1244.194 kb on - strandat 1244.218 kb on + strandat 1244.233 kb on + strand, within BWI76_RS05920at 1244.238 kb on + strand, within BWI76_RS05920at 1244.239 kb on - strandat 1244.246 kb on - strand, within BWI76_RS05920at 1244.252 kb on - strand, within BWI76_RS05920at 1244.262 kb on - strand, within BWI76_RS05920at 1244.297 kb on + strand, within BWI76_RS05920at 1244.301 kb on + strand, within BWI76_RS05920at 1244.311 kb on + strand, within BWI76_RS05920at 1244.338 kb on + strand, within BWI76_RS05920at 1244.346 kb on + strand, within BWI76_RS05920at 1244.346 kb on - strand, within BWI76_RS05920at 1244.414 kb on + strand, within BWI76_RS05920at 1244.465 kb on + strand, within BWI76_RS05920at 1244.583 kb on + strand, within BWI76_RS05920at 1244.589 kb on + strand, within BWI76_RS05920at 1244.599 kb on - strand, within BWI76_RS05920at 1244.627 kb on + strand, within BWI76_RS05920at 1244.635 kb on - strand, within BWI76_RS05920at 1244.740 kb on + strandat 1244.748 kb on - strandat 1244.798 kb on - strandat 1244.848 kb on - strandat 1245.003 kb on - strand, within BWI76_RS05925at 1245.140 kb on - strand, within BWI76_RS05925at 1245.165 kb on + strand, within BWI76_RS05925at 1245.175 kb on - strand, within BWI76_RS05925at 1245.227 kb on + strand, within BWI76_RS05925at 1245.291 kb on + strand, within BWI76_RS05925at 1245.291 kb on + strand, within BWI76_RS05925at 1245.737 kb on + strandat 1245.737 kb on + strandat 1245.745 kb on - strandat 1245.759 kb on - strandat 1245.876 kb on + strand, within BWI76_RS05930at 1245.915 kb on - strand, within BWI76_RS05930at 1245.968 kb on - strand, within BWI76_RS05930at 1245.994 kb on - strand, within BWI76_RS05930at 1246.029 kb on + strand, within BWI76_RS05930at 1246.036 kb on + strand, within BWI76_RS05930at 1246.153 kb on + strand, within BWI76_RS05930at 1246.154 kb on + strand, within BWI76_RS05930at 1246.155 kb on + strand, within BWI76_RS05930at 1246.163 kb on - strand, within BWI76_RS05930at 1246.177 kb on - strand, within BWI76_RS05930at 1246.263 kb on + strand, within BWI76_RS05930at 1246.408 kb on - strand, within BWI76_RS05930at 1246.418 kb on + strand, within BWI76_RS05930

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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1,243,884 + +0.0
1,243,949 + BWI76_RS05915 0.88 -1.0
1,243,957 - BWI76_RS05915 0.89 -0.3
1,243,963 + +0.4
1,243,996 + +0.1
1,244,011 + -0.1
1,244,050 + +0.8
1,244,050 + +0.0
1,244,093 + +0.8
1,244,093 + +0.4
1,244,093 + -0.8
1,244,093 + -0.1
1,244,093 + +0.1
1,244,093 + -0.8
1,244,094 + +0.4
1,244,094 + +0.4
1,244,095 + -0.3
1,244,098 + -0.3
1,244,098 + -0.9
1,244,098 + -0.2
1,244,098 + +0.9
1,244,098 + +0.3
1,244,101 - +1.6
1,244,101 - +0.3
1,244,101 - -1.8
1,244,106 - +0.0
1,244,106 - -0.3
1,244,117 + +0.5
1,244,122 + +0.0
1,244,122 + +0.0
1,244,124 + +0.1
1,244,128 - +1.9
1,244,130 - +1.1
1,244,131 + +1.0
1,244,131 + +0.6
1,244,186 + -1.3
1,244,194 - -1.0
1,244,218 + +0.4
1,244,233 + BWI76_RS05920 0.11 +1.4
1,244,238 + BWI76_RS05920 0.12 +0.3
1,244,239 - +0.0
1,244,246 - BWI76_RS05920 0.13 +1.0
1,244,252 - BWI76_RS05920 0.14 +1.4
1,244,262 - BWI76_RS05920 0.16 -0.3
1,244,297 + BWI76_RS05920 0.22 +0.5
1,244,301 + BWI76_RS05920 0.23 -0.5
1,244,311 + BWI76_RS05920 0.24 -0.2
1,244,338 + BWI76_RS05920 0.29 -0.2
1,244,346 + BWI76_RS05920 0.30 -1.0
1,244,346 - BWI76_RS05920 0.30 +0.8
1,244,414 + BWI76_RS05920 0.42 +3.1
1,244,465 + BWI76_RS05920 0.51 -0.5
1,244,583 + BWI76_RS05920 0.71 -3.4
1,244,589 + BWI76_RS05920 0.72 +0.1
1,244,599 - BWI76_RS05920 0.73 +2.0
1,244,627 + BWI76_RS05920 0.78 -0.3
1,244,635 - BWI76_RS05920 0.80 +0.7
1,244,740 + +1.2
1,244,748 - +1.0
1,244,798 - -2.1
1,244,848 - +0.6
1,245,003 - BWI76_RS05925 0.28 -3.1
1,245,140 - BWI76_RS05925 0.49 +0.2
1,245,165 + BWI76_RS05925 0.52 -2.2
1,245,175 - BWI76_RS05925 0.54 -1.0
1,245,227 + BWI76_RS05925 0.62 -2.7
1,245,291 + BWI76_RS05925 0.71 -2.2
1,245,291 + BWI76_RS05925 0.71 -0.5
1,245,737 + +1.5
1,245,737 + +0.2
1,245,745 - +1.0
1,245,759 - -1.0
1,245,876 + BWI76_RS05930 0.15 +0.4
1,245,915 - BWI76_RS05930 0.16 +0.5
1,245,968 - BWI76_RS05930 0.18 -4.0
1,245,994 - BWI76_RS05930 0.19 -0.1
1,246,029 + BWI76_RS05930 0.21 +0.5
1,246,036 + BWI76_RS05930 0.21 +0.5
1,246,153 + BWI76_RS05930 0.25 -1.0
1,246,154 + BWI76_RS05930 0.26 +0.8
1,246,155 + BWI76_RS05930 0.26 -1.9
1,246,163 - BWI76_RS05930 0.26 -0.9
1,246,177 - BWI76_RS05930 0.26 -0.1
1,246,263 + BWI76_RS05930 0.30 +0.1
1,246,408 - BWI76_RS05930 0.36 -0.3
1,246,418 + BWI76_RS05930 0.36 -0.6

Or see this region's nucleotide sequence