Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS04060

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS04055 and BWI76_RS04060 are separated by 262 nucleotidesBWI76_RS04060 and BWI76_RS04065 are separated by 20 nucleotidesBWI76_RS04065 and BWI76_RS04070 are separated by 31 nucleotidesBWI76_RS04070 and BWI76_RS04075 are separated by 28 nucleotidesBWI76_RS04075 and BWI76_RS04080 are separated by 167 nucleotides BWI76_RS04055: BWI76_RS04055 - GGDEF domain-containing protein, at 838,202 to 839,248 _RS04055 BWI76_RS04060: BWI76_RS04060 - hypothetical protein, at 839,511 to 839,750 _RS04060 BWI76_RS04065: BWI76_RS04065 - tRNA-Leu, at 839,771 to 839,857 _RS04065 BWI76_RS04070: BWI76_RS04070 - tRNA-Leu, at 839,889 to 839,975 _RS04070 BWI76_RS04075: BWI76_RS04075 - tRNA-Leu, at 840,004 to 840,090 _RS04075 BWI76_RS04080: BWI76_RS04080 - 16S rRNA (guanine(1207)-N(2))-methyltransferase, at 840,258 to 841,286 _RS04080 Position (kb) 839 840Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 838.534 kb on + strand, within BWI76_RS04055at 838.535 kb on + strand, within BWI76_RS04055at 838.605 kb on - strand, within BWI76_RS04055at 838.605 kb on - strand, within BWI76_RS04055at 838.607 kb on + strand, within BWI76_RS04055at 838.607 kb on + strandat 838.610 kb on - strand, within BWI76_RS04055at 838.615 kb on - strand, within BWI76_RS04055at 838.616 kb on - strand, within BWI76_RS04055at 838.624 kb on - strand, within BWI76_RS04055at 838.660 kb on - strand, within BWI76_RS04055at 838.662 kb on + strand, within BWI76_RS04055at 838.677 kb on + strand, within BWI76_RS04055at 838.690 kb on + strand, within BWI76_RS04055at 838.690 kb on + strand, within BWI76_RS04055at 838.698 kb on - strandat 838.705 kb on - strand, within BWI76_RS04055at 838.706 kb on - strand, within BWI76_RS04055at 838.732 kb on - strand, within BWI76_RS04055at 838.759 kb on + strand, within BWI76_RS04055at 838.767 kb on - strand, within BWI76_RS04055at 838.769 kb on + strand, within BWI76_RS04055at 838.783 kb on - strand, within BWI76_RS04055at 838.802 kb on + strand, within BWI76_RS04055at 838.803 kb on + strand, within BWI76_RS04055at 838.810 kb on - strand, within BWI76_RS04055at 838.811 kb on - strand, within BWI76_RS04055at 838.811 kb on - strand, within BWI76_RS04055at 838.820 kb on + strand, within BWI76_RS04055at 838.820 kb on + strand, within BWI76_RS04055at 838.820 kb on + strand, within BWI76_RS04055at 838.820 kb on + strand, within BWI76_RS04055at 838.828 kb on - strand, within BWI76_RS04055at 838.848 kb on - strand, within BWI76_RS04055at 838.848 kb on - strand, within BWI76_RS04055at 838.848 kb on - strand, within BWI76_RS04055at 838.850 kb on + strand, within BWI76_RS04055at 838.850 kb on + strand, within BWI76_RS04055at 838.850 kb on + strand, within BWI76_RS04055at 838.850 kb on + strand, within BWI76_RS04055at 838.857 kb on - strand, within BWI76_RS04055at 838.867 kb on - strand, within BWI76_RS04055at 838.867 kb on - strand, within BWI76_RS04055at 838.871 kb on + strand, within BWI76_RS04055at 838.871 kb on - strand, within BWI76_RS04055at 838.876 kb on + strand, within BWI76_RS04055at 838.876 kb on - strand, within BWI76_RS04055at 838.942 kb on + strand, within BWI76_RS04055at 838.987 kb on + strand, within BWI76_RS04055at 838.996 kb on + strand, within BWI76_RS04055at 839.001 kb on + strand, within BWI76_RS04055at 839.001 kb on + strand, within BWI76_RS04055at 839.001 kb on + strand, within BWI76_RS04055at 839.004 kb on - strand, within BWI76_RS04055at 839.004 kb on - strand, within BWI76_RS04055at 839.009 kb on - strand, within BWI76_RS04055at 839.009 kb on - strand, within BWI76_RS04055at 839.009 kb on - strand, within BWI76_RS04055at 839.011 kb on + strand, within BWI76_RS04055at 839.011 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.058 kb on + strand, within BWI76_RS04055at 839.066 kb on + strand, within BWI76_RS04055at 839.066 kb on + strand, within BWI76_RS04055at 839.066 kb on + strand, within BWI76_RS04055at 839.066 kb on + strand, within BWI76_RS04055at 839.066 kb on - strand, within BWI76_RS04055at 839.074 kb on - strand, within BWI76_RS04055at 839.075 kb on + strand, within BWI76_RS04055at 839.075 kb on + strandat 839.075 kb on + strand, within BWI76_RS04055at 839.075 kb on + strand, within BWI76_RS04055at 839.075 kb on - strand, within BWI76_RS04055at 839.080 kb on + strand, within BWI76_RS04055at 839.083 kb on - strand, within BWI76_RS04055at 839.083 kb on - strand, within BWI76_RS04055at 839.083 kb on - strand, within BWI76_RS04055at 839.083 kb on - strand, within BWI76_RS04055at 839.088 kb on - strand, within BWI76_RS04055at 839.088 kb on - strand, within BWI76_RS04055at 839.098 kb on - strand, within BWI76_RS04055at 839.101 kb on + strand, within BWI76_RS04055at 839.106 kb on + strand, within BWI76_RS04055at 839.109 kb on - strand, within BWI76_RS04055at 839.111 kb on + strand, within BWI76_RS04055at 839.111 kb on + strand, within BWI76_RS04055at 839.111 kb on + strand, within BWI76_RS04055at 839.114 kb on - strand, within BWI76_RS04055at 839.114 kb on - strand, within BWI76_RS04055at 839.114 kb on - strand, within BWI76_RS04055at 839.114 kb on - strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.116 kb on + strand, within BWI76_RS04055at 839.119 kb on - strandat 839.119 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.124 kb on - strand, within BWI76_RS04055at 839.130 kb on + strand, within BWI76_RS04055at 839.138 kb on - strand, within BWI76_RS04055at 839.138 kb on - strand, within BWI76_RS04055at 839.140 kb on - strand, within BWI76_RS04055at 839.141 kb on - strand, within BWI76_RS04055at 839.145 kb on - strandat 839.145 kb on - strandat 839.163 kb on + strandat 839.172 kb on + strandat 839.172 kb on + strandat 839.218 kb on + strandat 839.228 kb on - strandat 839.229 kb on + strandat 839.229 kb on + strandat 839.229 kb on + strandat 839.229 kb on + strandat 839.229 kb on + strandat 839.229 kb on + strandat 839.229 kb on + strandat 839.234 kb on + strandat 839.236 kb on - strandat 839.237 kb on - strandat 839.237 kb on - strandat 839.237 kb on - strandat 839.237 kb on - strandat 839.237 kb on - strandat 839.237 kb on - strandat 839.237 kb on - strandat 839.239 kb on + strandat 839.239 kb on + strandat 839.239 kb on + strandat 839.244 kb on + strandat 839.248 kb on + strandat 839.253 kb on + strandat 839.289 kb on - strandat 839.292 kb on + strandat 839.386 kb on + strandat 839.398 kb on + strandat 839.422 kb on + strandat 839.422 kb on + strandat 839.422 kb on + strandat 839.422 kb on + strandat 839.430 kb on - strandat 839.430 kb on - strandat 839.430 kb on - strandat 839.531 kb on - strandat 839.555 kb on - strand, within BWI76_RS04060at 839.638 kb on - strand, within BWI76_RS04060at 839.697 kb on + strand, within BWI76_RS04060at 840.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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838,534 + BWI76_RS04055 0.32 -0.9
838,535 + BWI76_RS04055 0.32 -0.3
838,605 - BWI76_RS04055 0.38 +0.9
838,605 - BWI76_RS04055 0.38 -0.3
838,607 + BWI76_RS04055 0.39 +0.3
838,607 + +0.1
838,610 - BWI76_RS04055 0.39 +0.4
838,615 - BWI76_RS04055 0.39 +2.1
838,616 - BWI76_RS04055 0.40 -0.8
838,624 - BWI76_RS04055 0.40 +0.5
838,660 - BWI76_RS04055 0.44 +1.1
838,662 + BWI76_RS04055 0.44 +2.8
838,677 + BWI76_RS04055 0.45 +1.1
838,690 + BWI76_RS04055 0.47 +0.8
838,690 + BWI76_RS04055 0.47 -0.3
838,698 - +0.1
838,705 - BWI76_RS04055 0.48 +0.6
838,706 - BWI76_RS04055 0.48 -0.4
838,732 - BWI76_RS04055 0.51 +1.2
838,759 + BWI76_RS04055 0.53 -0.5
838,767 - BWI76_RS04055 0.54 +1.7
838,769 + BWI76_RS04055 0.54 +0.1
838,783 - BWI76_RS04055 0.55 -1.4
838,802 + BWI76_RS04055 0.57 +0.7
838,803 + BWI76_RS04055 0.57 +0.0
838,810 - BWI76_RS04055 0.58 -0.9
838,811 - BWI76_RS04055 0.58 +0.4
838,811 - BWI76_RS04055 0.58 +0.1
838,820 + BWI76_RS04055 0.59 -4.2
838,820 + BWI76_RS04055 0.59 +1.0
838,820 + BWI76_RS04055 0.59 +0.5
838,820 + BWI76_RS04055 0.59 +0.1
838,828 - BWI76_RS04055 0.60 +0.0
838,848 - BWI76_RS04055 0.62 +2.1
838,848 - BWI76_RS04055 0.62 -2.8
838,848 - BWI76_RS04055 0.62 +1.4
838,850 + BWI76_RS04055 0.62 +1.5
838,850 + BWI76_RS04055 0.62 +0.6
838,850 + BWI76_RS04055 0.62 -0.4
838,850 + BWI76_RS04055 0.62 +0.4
838,857 - BWI76_RS04055 0.63 +0.2
838,867 - BWI76_RS04055 0.64 -1.7
838,867 - BWI76_RS04055 0.64 -1.2
838,871 + BWI76_RS04055 0.64 -0.4
838,871 - BWI76_RS04055 0.64 +0.0
838,876 + BWI76_RS04055 0.64 +2.5
838,876 - BWI76_RS04055 0.64 +0.5
838,942 + BWI76_RS04055 0.71 -1.0
838,987 + BWI76_RS04055 0.75 +0.5
838,996 + BWI76_RS04055 0.76 +4.1
839,001 + BWI76_RS04055 0.76 +1.1
839,001 + BWI76_RS04055 0.76 +1.7
839,001 + BWI76_RS04055 0.76 +2.2
839,004 - BWI76_RS04055 0.77 -1.2
839,004 - BWI76_RS04055 0.77 +0.4
839,009 - BWI76_RS04055 0.77 -0.1
839,009 - BWI76_RS04055 0.77 -1.2
839,009 - BWI76_RS04055 0.77 +0.1
839,011 + BWI76_RS04055 0.77 +0.6
839,011 + BWI76_RS04055 0.77 +1.5
839,058 + BWI76_RS04055 0.82 -0.2
839,058 + BWI76_RS04055 0.82 -0.7
839,058 + BWI76_RS04055 0.82 +0.5
839,058 + BWI76_RS04055 0.82 -0.1
839,058 + BWI76_RS04055 0.82 -0.9
839,058 + BWI76_RS04055 0.82 -0.5
839,066 + BWI76_RS04055 0.83 -1.5
839,066 + BWI76_RS04055 0.83 +0.1
839,066 + BWI76_RS04055 0.83 -0.4
839,066 + BWI76_RS04055 0.83 +0.3
839,066 - BWI76_RS04055 0.83 +2.1
839,074 - BWI76_RS04055 0.83 +1.4
839,075 + BWI76_RS04055 0.83 -0.4
839,075 + +0.1
839,075 + BWI76_RS04055 0.83 +0.1
839,075 + BWI76_RS04055 0.83 -0.8
839,075 - BWI76_RS04055 0.83 -2.4
839,080 + BWI76_RS04055 0.84 +1.0
839,083 - BWI76_RS04055 0.84 +0.1
839,083 - BWI76_RS04055 0.84 -2.9
839,083 - BWI76_RS04055 0.84 -1.7
839,083 - BWI76_RS04055 0.84 -1.9
839,088 - BWI76_RS04055 0.85 -0.0
839,088 - BWI76_RS04055 0.85 -2.4
839,098 - BWI76_RS04055 0.86 -0.1
839,101 + BWI76_RS04055 0.86 +0.1
839,106 + BWI76_RS04055 0.86 +0.6
839,109 - BWI76_RS04055 0.87 -0.1
839,111 + BWI76_RS04055 0.87 -0.8
839,111 + BWI76_RS04055 0.87 +1.4
839,111 + BWI76_RS04055 0.87 -2.1
839,114 - BWI76_RS04055 0.87 +1.1
839,114 - BWI76_RS04055 0.87 +0.2
839,114 - BWI76_RS04055 0.87 +0.3
839,114 - BWI76_RS04055 0.87 -0.0
839,116 + BWI76_RS04055 0.87 -2.8
839,116 + BWI76_RS04055 0.87 +1.1
839,116 + BWI76_RS04055 0.87 +2.4
839,116 + BWI76_RS04055 0.87 +0.3
839,116 + BWI76_RS04055 0.87 -0.3
839,116 + BWI76_RS04055 0.87 -0.3
839,116 + BWI76_RS04055 0.87 -0.4
839,116 + BWI76_RS04055 0.87 +0.7
839,116 + BWI76_RS04055 0.87 -2.7
839,116 + BWI76_RS04055 0.87 +0.4
839,116 + BWI76_RS04055 0.87 -0.2
839,119 - +1.1
839,119 - BWI76_RS04055 0.88 +0.1
839,124 - BWI76_RS04055 0.88 -2.3
839,124 - BWI76_RS04055 0.88 +1.4
839,124 - BWI76_RS04055 0.88 -0.4
839,124 - BWI76_RS04055 0.88 +0.7
839,124 - BWI76_RS04055 0.88 +0.7
839,124 - BWI76_RS04055 0.88 -0.5
839,124 - BWI76_RS04055 0.88 -1.6
839,124 - BWI76_RS04055 0.88 -2.4
839,124 - BWI76_RS04055 0.88 +0.7
839,124 - BWI76_RS04055 0.88 +0.6
839,124 - BWI76_RS04055 0.88 -0.9
839,124 - BWI76_RS04055 0.88 +2.7
839,124 - BWI76_RS04055 0.88 +0.2
839,124 - BWI76_RS04055 0.88 +1.1
839,124 - BWI76_RS04055 0.88 +0.9
839,130 + BWI76_RS04055 0.89 +0.3
839,138 - BWI76_RS04055 0.89 +1.0
839,138 - BWI76_RS04055 0.89 -1.2
839,140 - BWI76_RS04055 0.90 +2.5
839,141 - BWI76_RS04055 0.90 -0.2
839,145 - +0.9
839,145 - -0.4
839,163 + +0.0
839,172 + -0.9
839,172 + +0.9
839,218 + +0.4
839,228 - -2.2
839,229 + -0.3
839,229 + +1.2
839,229 + -3.9
839,229 + +0.4
839,229 + -0.4
839,229 + -0.0
839,229 + -0.7
839,234 + +0.2
839,236 - +1.1
839,237 - -2.6
839,237 - -1.2
839,237 - -1.4
839,237 - -1.0
839,237 - +0.4
839,237 - +0.5
839,237 - -2.6
839,239 + -0.4
839,239 + +2.1
839,239 + +0.3
839,244 + +0.9
839,248 + -1.9
839,253 + +0.7
839,289 - +1.0
839,292 + -0.6
839,386 + +0.6
839,398 + +0.7
839,422 + -0.9
839,422 + +0.1
839,422 + +2.0
839,422 + +0.6
839,430 - +1.1
839,430 - -1.7
839,430 - +0.3
839,531 - +0.0
839,555 - BWI76_RS04060 0.18 +0.3
839,638 - BWI76_RS04060 0.53 +2.0
839,697 + BWI76_RS04060 0.78 +1.4
840,292 - +0.1

Or see this region's nucleotide sequence