Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS01895

Experiment: 2-Deoxyadenosine 4 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS01885 and BWI76_RS01890 are separated by 90 nucleotidesBWI76_RS01890 and BWI76_RS01895 are separated by 192 nucleotidesBWI76_RS01895 and BWI76_RS01900 are separated by 107 nucleotides BWI76_RS01885: BWI76_RS01885 - CsbD family protein, at 385,233 to 385,445 _RS01885 BWI76_RS01890: BWI76_RS01890 - transcriptional regulator Zur, at 385,536 to 386,051 _RS01890 BWI76_RS01895: BWI76_RS01895 - cupin, at 386,244 to 386,732 _RS01895 BWI76_RS01900: BWI76_RS01900 - tRNA-dihydrouridine synthase A, at 386,840 to 387,835 _RS01900 Position (kb) 386 387Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 385.328 kb on + strand, within BWI76_RS01885at 385.599 kb on - strand, within BWI76_RS01890at 385.746 kb on + strand, within BWI76_RS01890at 385.913 kb on + strand, within BWI76_RS01890at 385.921 kb on - strand, within BWI76_RS01890at 385.921 kb on - strand, within BWI76_RS01890at 385.937 kb on + strand, within BWI76_RS01890at 386.040 kb on + strandat 386.186 kb on - strandat 386.208 kb on + strandat 386.209 kb on - strandat 386.213 kb on + strandat 386.295 kb on - strand, within BWI76_RS01895at 386.314 kb on + strand, within BWI76_RS01895at 386.322 kb on - strand, within BWI76_RS01895at 386.475 kb on - strand, within BWI76_RS01895at 387.444 kb on - strand, within BWI76_RS01900at 387.475 kb on - strand, within BWI76_RS01900at 387.505 kb on + strand, within BWI76_RS01900at 387.657 kb on + strand, within BWI76_RS01900at 387.675 kb on + strand, within BWI76_RS01900

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxyadenosine 4 mM (C)
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385,328 + BWI76_RS01885 0.45 -0.0
385,599 - BWI76_RS01890 0.12 +0.5
385,746 + BWI76_RS01890 0.41 -1.5
385,913 + BWI76_RS01890 0.73 -1.5
385,921 - BWI76_RS01890 0.75 +0.3
385,921 - BWI76_RS01890 0.75 -0.1
385,937 + BWI76_RS01890 0.78 -3.3
386,040 + -2.1
386,186 - +0.1
386,208 + +0.5
386,209 - -0.8
386,213 + +0.7
386,295 - BWI76_RS01895 0.10 -0.9
386,314 + BWI76_RS01895 0.14 -0.4
386,322 - BWI76_RS01895 0.16 -3.3
386,475 - BWI76_RS01895 0.47 -1.1
387,444 - BWI76_RS01900 0.61 -1.4
387,475 - BWI76_RS01900 0.64 +2.0
387,505 + BWI76_RS01900 0.67 -1.2
387,657 + BWI76_RS01900 0.82 +0.2
387,675 + BWI76_RS01900 0.84 +2.4

Or see this region's nucleotide sequence