Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05720

Experiment: 2'-Deoxycytidine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05715 and BWI76_RS05720 overlap by 4 nucleotidesBWI76_RS05720 and BWI76_RS05725 are separated by 81 nucleotides BWI76_RS05715: BWI76_RS05715 - RND family efflux transporter MFP subunit, at 1,200,444 to 1,201,553 _RS05715 BWI76_RS05720: BWI76_RS05720 - cation/multidrug efflux pump, at 1,201,550 to 1,204,639 _RS05720 BWI76_RS05725: BWI76_RS05725 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 1,204,721 to 1,206,007 _RS05725 Position (kb) 1201 1202 1203 1204 1205Strain fitness (log2 ratio) -1 0 1 2at 1200.679 kb on - strand, within BWI76_RS05715at 1200.866 kb on + strand, within BWI76_RS05715at 1200.944 kb on + strand, within BWI76_RS05715at 1200.944 kb on + strand, within BWI76_RS05715at 1201.006 kb on + strand, within BWI76_RS05715at 1201.021 kb on - strand, within BWI76_RS05715at 1201.220 kb on + strand, within BWI76_RS05715at 1201.401 kb on - strand, within BWI76_RS05715at 1201.482 kb on - strandat 1201.515 kb on + strandat 1201.523 kb on - strandat 1201.627 kb on - strandat 1201.686 kb on + strandat 1201.808 kb on + strandat 1201.816 kb on - strandat 1201.828 kb on + strandat 1201.828 kb on + strandat 1201.828 kb on + strandat 1201.829 kb on + strandat 1201.836 kb on - strandat 1201.881 kb on - strand, within BWI76_RS05720at 1201.893 kb on - strand, within BWI76_RS05720at 1202.227 kb on + strand, within BWI76_RS05720at 1202.353 kb on + strand, within BWI76_RS05720at 1202.450 kb on - strand, within BWI76_RS05720at 1202.518 kb on - strand, within BWI76_RS05720at 1202.662 kb on - strand, within BWI76_RS05720at 1202.697 kb on - strand, within BWI76_RS05720at 1202.726 kb on - strand, within BWI76_RS05720at 1202.731 kb on - strand, within BWI76_RS05720at 1203.014 kb on - strand, within BWI76_RS05720at 1203.047 kb on + strand, within BWI76_RS05720at 1203.222 kb on + strand, within BWI76_RS05720at 1203.230 kb on - strand, within BWI76_RS05720at 1203.460 kb on - strand, within BWI76_RS05720at 1203.495 kb on + strand, within BWI76_RS05720at 1203.547 kb on - strand, within BWI76_RS05720at 1203.573 kb on + strand, within BWI76_RS05720at 1203.610 kb on + strand, within BWI76_RS05720at 1203.648 kb on - strand, within BWI76_RS05720at 1203.680 kb on + strand, within BWI76_RS05720at 1203.680 kb on + strand, within BWI76_RS05720at 1203.791 kb on - strand, within BWI76_RS05720at 1203.809 kb on + strand, within BWI76_RS05720at 1203.851 kb on - strand, within BWI76_RS05720at 1204.093 kb on + strand, within BWI76_RS05720at 1204.325 kb on + strand, within BWI76_RS05720at 1204.353 kb on - strandat 1204.538 kb on - strandat 1204.574 kb on + strandat 1204.809 kb on + strandat 1204.936 kb on + strand, within BWI76_RS05725at 1204.936 kb on + strand, within BWI76_RS05725at 1205.359 kb on - strand, within BWI76_RS05725at 1205.414 kb on - strand, within BWI76_RS05725at 1205.424 kb on - strand, within BWI76_RS05725at 1205.533 kb on + strand, within BWI76_RS05725at 1205.625 kb on - strand, within BWI76_RS05725at 1205.625 kb on - strand, within BWI76_RS05725

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxycytidine 5 mM (C)
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1,200,679 - BWI76_RS05715 0.21 -0.0
1,200,866 + BWI76_RS05715 0.38 -0.1
1,200,944 + BWI76_RS05715 0.45 -0.6
1,200,944 + BWI76_RS05715 0.45 -0.4
1,201,006 + BWI76_RS05715 0.51 -0.5
1,201,021 - BWI76_RS05715 0.52 +0.2
1,201,220 + BWI76_RS05715 0.70 +0.1
1,201,401 - BWI76_RS05715 0.86 -0.3
1,201,482 - +1.2
1,201,515 + -0.0
1,201,523 - +0.2
1,201,627 - +0.1
1,201,686 + +0.2
1,201,808 + +0.1
1,201,816 - +1.0
1,201,828 + -0.2
1,201,828 + -0.2
1,201,828 + -0.4
1,201,829 + +1.3
1,201,836 - +1.3
1,201,881 - BWI76_RS05720 0.11 -0.7
1,201,893 - BWI76_RS05720 0.11 +0.1
1,202,227 + BWI76_RS05720 0.22 +0.4
1,202,353 + BWI76_RS05720 0.26 -0.2
1,202,450 - BWI76_RS05720 0.29 +0.3
1,202,518 - BWI76_RS05720 0.31 -0.0
1,202,662 - BWI76_RS05720 0.36 -0.3
1,202,697 - BWI76_RS05720 0.37 +0.7
1,202,726 - BWI76_RS05720 0.38 -1.3
1,202,731 - BWI76_RS05720 0.38 +0.1
1,203,014 - BWI76_RS05720 0.47 -0.1
1,203,047 + BWI76_RS05720 0.48 +0.2
1,203,222 + BWI76_RS05720 0.54 +0.7
1,203,230 - BWI76_RS05720 0.54 +0.9
1,203,460 - BWI76_RS05720 0.62 +0.2
1,203,495 + BWI76_RS05720 0.63 +1.9
1,203,547 - BWI76_RS05720 0.65 -0.7
1,203,573 + BWI76_RS05720 0.65 +0.9
1,203,610 + BWI76_RS05720 0.67 +0.8
1,203,648 - BWI76_RS05720 0.68 +0.7
1,203,680 + BWI76_RS05720 0.69 +1.3
1,203,680 + BWI76_RS05720 0.69 -0.6
1,203,791 - BWI76_RS05720 0.73 +1.8
1,203,809 + BWI76_RS05720 0.73 +0.9
1,203,851 - BWI76_RS05720 0.74 +1.3
1,204,093 + BWI76_RS05720 0.82 +0.0
1,204,325 + BWI76_RS05720 0.90 +1.9
1,204,353 - +0.9
1,204,538 - +0.2
1,204,574 + +0.4
1,204,809 + -0.4
1,204,936 + BWI76_RS05725 0.17 -0.1
1,204,936 + BWI76_RS05725 0.17 +0.8
1,205,359 - BWI76_RS05725 0.50 +0.5
1,205,414 - BWI76_RS05725 0.54 -0.0
1,205,424 - BWI76_RS05725 0.55 +0.5
1,205,533 + BWI76_RS05725 0.63 +0.7
1,205,625 - BWI76_RS05725 0.70 -0.0
1,205,625 - BWI76_RS05725 0.70 +0.2

Or see this region's nucleotide sequence